Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42260 148 / 1e-43 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 (.1) AT3G57860 118 / 3e-32 GIG1, OSD1, UVI4-LIKE OMISSION OF SECOND DIVISION, GIGAS CELL 1, UV-B-insensitive 4-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050300 [exp] 302 / 2e-104 AT2G42260 147 / 2e-43 POLYCHOME, uv-b-insensitive 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024522 [exp] 122 / 1e-33 AT2G42260 131 / 5e-37 POLYCHOME, uv-b-insensitive 4 (.1) Lus10008728 [exp] 100 / 1e-24 AT2G42260 93 / 7e-22 POLYCHOME, uv-b-insensitive 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G057800.1 pacid=42770665 polypeptide=Potri.006G057800.1.p locus=Potri.006G057800 ID=Potri.006G057800.1.v4.1 annot-version=v4.1 ATGCCGGTATCAAGAGATAGATTGTCAAGCCCAGTAGACATAGCTGCACTCTTTGCTGCTCGAAGACAATCAAGGATTCTTGGTGTCTATCAAGACCAGC CAGAACTTGACATGGCGCTGTTTGGTTCTCCTAGACCAAACGCAGCAACAAGAACTCAAACAGTGGGTGCGGGTACCATTGCTGTGCGTGGAAGAGGTGG TTTGGGCACTCCAAGGGGCCGAGGTGGCCGGACTACATTGGGCAGAGAAAATATTCCTCCACCTGGGAGTGCCCGAAGAGGAAGGGGTCGTGGATCAAAT AGTGTGTTACCTGCCTGGTACCCTAGGACTCCTCTTCGTGATGTCACTGCTGTTGTTAGGGCCATTGAAAGGAGAAGGGAACGCTTGGGAGGAAGTGATG GCCTAGAAATCAGGAGCCCAATGCCTCAAGTCCGAATGAATCATGACTCTTCTGAGGCAACACCAGTTGCTCATCTCGAGCACAGCAACAGGATTATGTC CCCAAAACCAACTACTGCAGTCAAGGGCTGTTCTTCTACCATTGGTAAAGTGCCGAAAATTTTGCAGCATATTACAAACCAAGCCTCTGGTGATCCAGAC TCTCTAACACCCCAGAAGAAACTCCTTAACTCAATTGACACAGTTGAGAAAGTAGTGATGGAGGAGTTGCGAAAAATGAAGAGGACTCCTAGTGCTAGGA AGGCTGAGAGAGAGAAAAGAGTTCGAACTCTTATGTCAATGCGGTGA
AA sequence Show only first row Show all	>Potri.006G057800.1 pacid=42770665 polypeptide=Potri.006G057800.1.p locus=Potri.006G057800 ID=Potri.006G057800.1.v4.1 annot-version=v4.1 MPVSRDRLSSPVDIAALFAARRQSRILGVYQDQPELDMALFGSPRPNAATRTQTVGAGTIAVRGRGGLGTPRGRGGRTTLGRENIPPPGSARRGRGRGSN SVLPAWYPRTPLRDVTAVVRAIERRRERLGGSDGLEIRSPMPQVRMNHDSSEATPVAHLEHSNRIMSPKPTTAVKGCSSTIGKVPKILQHITNQASGDPD SLTPQKKLLNSIDTVEKVVMEELRKMKRTPSARKAEREKRVRTLMSMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	0	1
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	1.41	0.9689
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	1.73	0.9579
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	2.00	0.9679
AT3G07800			Thymidine kinase (.1)		Potri.002G222300 [exp]	4.89	0.9069
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	5.00	0.9368
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	5.47	0.9339
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	7.48	0.9240
AT4G28230			unknown protein		Potri.019G116200 [exp]	7.74	0.9140
AT3G48210			unknown protein		Potri.015G080900 [exp]	9.00	0.9043
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	10.00	0.8881

Compare expression of checked genes

Potri.006G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.