Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42250 725 / 0 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT5G06905 467 / 6e-161 CYP712A2 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) AT4G15360 406 / 4e-137 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT3G20940 406 / 5e-137 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20950 394 / 2e-132 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT1G50520 394 / 5e-132 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT3G20130 383 / 4e-128 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT5G47990 380 / 4e-127 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT3G20110 379 / 1e-126 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT3G20100 377 / 1e-125 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G052600 [exp] 588 / 0 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 555 / 0 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G050200 [exp] 500 / 7e-174 AT5G06905 492 / 1e-170 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.016G049800 [exp] 469 / 5e-162 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058100 [exp] 469 / 2e-161 AT5G06905 509 / 3e-177 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.006G058200 [exp] 459 / 4e-158 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.009G065000 [exp] 421 / 6e-143 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.001G270900 [exp] 420 / 1e-142 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 403 / 4e-136 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023827 [exp] 737 / 0 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10035502 [exp] 437 / 4e-149 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 377 / 7e-126 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 373 / 6e-124 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 339 / 6e-111 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 334 / 4e-109 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10041951 [exp] 320 / 1e-103 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 318 / 7e-103 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10008112 [exp] 313 / 8e-101 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 312 / 2e-100 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.006G057900.1 pacid=42768720 polypeptide=Potri.006G057900.1.p locus=Potri.006G057900 ID=Potri.006G057900.1.v4.1 annot-version=v4.1 ATGGCTACAACTGATATGTTCTATTACCTCCTCTTCCTTCTTTGGTTTGTCACTGCACTACTAGCACACTTCTTCATCAAAACATTCTTAAGATCCCGTA GTCAAAACAACCTCCCACCGAGCCCGCCAGCTCTACCTATCATTGGCCACCTCCACCTAATTGGGTCGGTCCTTGCAAAATCTTTCCAAACCCTTGCCGT TCGCTATGGTCCACTCATGCAGATCCGTCTAGGGGCATCAACATGTGTTGTTGCTTCTAATGCTGTGGTGGCCAAAGAAATATTTAAGACCCAAGATATC AATTTTTCCTCTAGACCTGAATTTGGCTCCTCCGAATACTTCATTTATAGAGGATCAAGATTCGTCACTGCCCAATATGGTGATTATTGGAGGTTCATGA AAAAACTATGCATGACAAGGCTCCTTTCTGTCCCTCAACTTGAGAAATTCACCGACATCCTTGATGAAGAGAAGGTCAAGCTTGTCGAATCGGTGATGGG GTGTGCTAGGGAAGGGAAATTGTGTGATTTGAGTGGTGAGTTTACAGCCTTGACAAACAATACTATTTGTCGGATGACAATGAGCACTCGATGCTCAGGC AGTAATAATGATGCTGATAAGATTGAGCGGTTGGTTAAGACATGTTTACAGCTTGCAGGGAAGTTAAGTTTAGGGGATATTTTGGGTCCTTTCAAGATTT TTGACTTCTCTGGGAATGGGAAAAAGCTAGTTGGTGCACTACAAGCCTATGATAGGTTAGTGGAGAGGATATTCAAGGAGCATGAAGAGAAGGCAGATAA AGGTTTCAAGGAAGGGGAGAGGAAGGATTTGATGGACATATTGTTGGAGATATATAATGATCCAACTGCTGAAATTAAATTATCTAAAAATGACATCAAG TCCTTTTTGCTTGACTTATTCTTTGCCGGGACAGACACATCAGCAACAGCCATGCAATGGGCCATGGGAGAGCTCATCAACAATCCCAAGGCATTCAAGA GGCTTAGAGATGAGATCAACACAGTTGTTGGGCCTAATAGACTTGTTAAGGAATCAGATGTCCCAAACCTCCCTTACCTTAAAGCAGTCATGAGAGAAAC ACTAAGACTTCACCCTTCAGCACCTTTAATCATCAGAGAATGCGCTGAAGATTGCAAGGTCAACGGCTCTGTCGTTAAGGCCAAGACAAGAGTTCTTGTC AATGTCTATGCAGTCATGAGGGACCCGGAATCATGGGCTAATCCCGACGAATTCATGCCTGAAAGGTTTTTGGAGAGCTCCGAGGAGAAAATTGGCGAGC ATCAGATGGAATTCAAGGGTCAAAATTTCCGGTTCCTTCCATTTGGGAGTGGAAGAAGAGGATGCCCTGGTGCATCCCTTGCTATGATGATCATGCATGC TGCAGTAGGGGCCTTGGTTCAGTGCTTTGATTGGAAAATCAAGGATGGGAAGGAGGTGGATTTAACCTTAGGACCTGGCTTTGCAGCAGAAATGGCTCAT CCACTCGTGTGCTACCCTATTAAGCACATGAACGCATATTAG
AA sequence Show only first row Show all	>Potri.006G057900.1 pacid=42768720 polypeptide=Potri.006G057900.1.p locus=Potri.006G057900 ID=Potri.006G057900.1.v4.1 annot-version=v4.1 MATTDMFYYLLFLLWFVTALLAHFFIKTFLRSRSQNNLPPSPPALPIIGHLHLIGSVLAKSFQTLAVRYGPLMQIRLGASTCVVASNAVVAKEIFKTQDI NFSSRPEFGSSEYFIYRGSRFVTAQYGDYWRFMKKLCMTRLLSVPQLEKFTDILDEEKVKLVESVMGCAREGKLCDLSGEFTALTNNTICRMTMSTRCSG SNNDADKIERLVKTCLQLAGKLSLGDILGPFKIFDFSGNGKKLVGALQAYDRLVERIFKEHEEKADKGFKEGERKDLMDILLEIYNDPTAEIKLSKNDIK SFLLDLFFAGTDTSATAMQWAMGELINNPKAFKRLRDEINTVVGPNRLVKESDVPNLPYLKAVMRETLRLHPSAPLIIRECAEDCKVNGSVVKAKTRVLV NVYAVMRDPESWANPDEFMPERFLESSEEKIGEHQMEFKGQNFRFLPFGSGRRGCPGASLAMMIMHAAVGALVQCFDWKIKDGKEVDLTLGPGFAAEMAH PLVCYPIKHMNAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176100 [exp]	1.00	0.9960	2OGox3
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.006G058200 [exp]	1.41	0.9914	Pt-CYP93.2
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.001G176200 [exp]	2.44	0.9906	AOP1.1
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G012800 [exp]	3.31	0.9782
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	3.74	0.9857
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	4.47	0.9872
AT2G01900			DNAse I-like superfamily prote...		Potri.012G041600 [exp]	6.00	0.9788
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	7.74	0.9861
AT5G19890			Peroxidase superfamily protein...		Potri.003G214500 [exp]	8.00	0.9740	PRX1.10
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	8.48	0.9793

Compare expression of checked genes

Potri.006G057900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.