Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 258 / 1e-85 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 226 / 5e-73 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 217 / 1e-69 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 115 / 4e-30 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G05660 110 / 2e-27 AtRLP33 receptor like protein 33 (.1) AT2G26380 108 / 4e-27 Leucine-rich repeat (LRR) family protein (.1) AT5G51560 105 / 9e-26 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 102 / 1e-24 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 102 / 1e-24 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT5G07280 102 / 2e-24 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049600 [exp] 380 / 1e-133 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.016G049400 [exp] 303 / 2e-103 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.006G058600 [exp] 300 / 6e-102 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.009G064300 [exp] 116 / 3e-30 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 112 / 5e-28 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 106 / 1e-26 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.002G147000 [exp] 106 / 6e-26 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 104 / 2e-25 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150050 [exp] 101 / 2e-25 AT3G47570 131 / 3e-34 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021028 [exp] 250 / 2e-82 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 246 / 1e-80 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 216 / 2e-69 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10004032 [exp] 110 / 2e-27 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 109 / 4e-27 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037705 [exp] 105 / 2e-26 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10009394 [exp] 106 / 1e-25 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038392 [exp] 105 / 1e-25 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031824 [exp] 103 / 2e-25 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037310 [exp] 102 / 1e-24 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G058500.2 pacid=42769758 polypeptide=Potri.006G058500.2.p locus=Potri.006G058500 ID=Potri.006G058500.2.v4.1 annot-version=v4.1 ATGAAAACCCTCTTCAATCTTCTTTCGCTCTCCCTTTCAGAAGAACTTTGCAATTCCCGTGATCAAAAAGTTCTCCTCCAAATTAAAAAACATTTTGGTG ATCCTTACCACCTAGCCTCATGGCTGCCAGGCACTGACTGCTGCACAGCTTGGAACCAGGTGGAGTGTGACCCCACCACCAACCGCGTAGTTTCCCTAAG AATTTTTTCTGGCAACCTTTCTGGTGAAATCCCTGCTGAAGTCGGGGACATGCCCTATCTCAAAACCCTTGAGTTCCACAAGTTGACAAATATTACCGGC CCCATACCAACCTCCATTTCCAAGCTCATACACCTCATTTCACTCACACTTAGCCGGCTCAACCTCACTGGCCCAGTACCTGACTCTCTTAGCAACCTCA AGAATCTGAGAGTATTGGACCTGTCTTTCAACAGCCTTTCAGGATCAATACCAAGCTCACTCGCTTTACTGCCAGAAATTGATATTCTTGGCTTGGACAG GAACAAGCTTACTGGTCCAATCCCAGAATCATTTGGCAACTTTGTAGGCAGAGTACCGGGTATTTCCCTGTCTCATAACCAACTTTCTGGTAAAATCCCC GCTTCACTAGACAACAGAAACTTTCGTTTGGTTGATTTCTCGCGCAACAAACTTGAAGGTGATGCTTCCATGTTTTTTGGTCCAAACAAACTACTCAAAG TGTGGATCTCTCAGGGAATTTGCTGGAGTTTAATTTTTCAAAGGTGGTGTTTCCAACCACCTTGA
AA sequence Show only first row Show all	>Potri.006G058500.2 pacid=42769758 polypeptide=Potri.006G058500.2.p locus=Potri.006G058500 ID=Potri.006G058500.2.v4.1 annot-version=v4.1 MKTLFNLLSLSLSEELCNSRDQKVLLQIKKHFGDPYHLASWLPGTDCCTAWNQVECDPTTNRVVSLRIFSGNLSGEIPAEVGDMPYLKTLEFHKLTNITG PIPTSISKLIHLISLTLSRLNLTGPVPDSLSNLKNLRVLDLSFNSLSGSIPSSLALLPEIDILGLDRNKLTGPIPESFGNFVGRVPGISLSHNQLSGKIP ASLDNRNFRLVDFSRNKLEGDASMFFGPNKLLKVWISQGICWSLIFQRWCFQPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058500 [exp]	0	1
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Potri.006G236000 [exp]	1.41	0.9496
AT4G35160			O-methyltransferase family pro...		Potri.019G093200 [exp]	6.00	0.9299
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137550 [exp]	8.83	0.9164
AT5G36930			Disease resistance protein (TI...		Potri.019G001602 [exp]	8.94	0.9454
AT4G18250			receptor serine/threonine kina...		Potri.017G009600 [exp]	9.16	0.9390
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	9.21	0.9222	Pt-AS2.2
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	10.72	0.9167
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026860 [exp]	13.41	0.9256
AT1G68180			RING/U-box superfamily protein...		Potri.012G126700 [exp]	18.73	0.9154
AT1G78850			D-mannose binding lectin prote...		Potri.011G110000 [exp]	19.20	0.9433

Compare expression of checked genes

Potri.006G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.