Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGIP.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 383 / 1e-133 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 353 / 7e-122 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 293 / 2e-98 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 162 / 8e-47 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 157 / 8e-45 Leucine-rich repeat (LRR) family protein (.1) AT3G20820 147 / 3e-41 Leucine-rich repeat (LRR) family protein (.1) AT5G07280 116 / 2e-28 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G26380 111 / 4e-27 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 109 / 2e-26 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 108 / 2e-26 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049400 [exp] 528 / 0 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 432 / 4e-153 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.006G058500 [exp] 278 / 3e-93 AT5G06860 258 / 2e-85 polygalacturonase inhibiting protein 1 (.1) Potri.003G207000 [exp] 152 / 3e-43 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 150 / 3e-42 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 149 / 9e-42 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 140 / 1e-38 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 119 / 1e-29 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G098900 [exp] 117 / 2e-29 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023824 [exp] 403 / 2e-141 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021028 [exp] 398 / 2e-139 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 342 / 9e-118 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10031824 [exp] 154 / 8e-44 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 146 / 1e-40 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 142 / 3e-39 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10023825 [exp] 131 / 2e-36 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10010949 [exp] 130 / 1e-34 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 126 / 3e-33 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 119 / 2e-31 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G058600.1 pacid=42770623 polypeptide=Potri.006G058600.1.p locus=Potri.006G058600 ID=Potri.006G058600.1.v4.1 annot-version=v4.1 ATGAATACCCTTTTCCTTTCCCTACTCATTTCCAGTACCCTTCTTTCACTCTCCCTCTCAAAAGAACTTTGCAATCCCCAAGATAAACAGGTTCTCCTCC AAATCAAAAAAGATTTTGGCGATCCTTACCTCTTAGCCTCATGGAAGTCAGATACTGATTGCTGCACAGACTGGTACCAGGTTGAGTGTGACTCCACAAC CAACCGCATCATTTCTCTCACCGTTTTTGCTGGCAACCTTTCTGGCCAAATCCCCGCTGCAGTTGGGGACTTGCCCTATCTCCAGAACCTTGTGTTTCGC AAGCTGACTGATATTACAGGCCCCGTACAGCCCGCCATTGCCAAGCTCGTACACCTAACGTTTCTCAGACTTGACAGGCTAAATCTCACAGGGACAGTAC CTGACTTTCTCAGCCAGCTCAAGAATCTCACATACTTGGACCTCTCTTTTAACGGCTTCTCTGGATCAATACCAAGCTCACTAGCTTTGCTGCCAAATCT TGGTGCTCTTCACTTGGACAGGAACAAGCTTACGGGCTCGATCCCAGAATCATTTGGTACCTTTAAAGGCAGCGTACCGGATCTTTACTTGTCTCACAAC CAACTTACTGGAGAAATCCCTGCATCATTAGGGAACATGGACTTCAGCGTCATTGATTTATCTCGCAACAAACTTGTTGGTGATGCTTCCATGTTATTTG GGCTAAACAAAACTACTAATAATGTGTATCTCTCCAGGAATCTATTCGAATTCAATTTGTCAAATGTGGTATTTCCAAGTACCATGGAAAATCTGGACAT TAATCACAACAAGATTTTCGGTAGCATTCCTCCACAAATGACTCAGCTACCTTTGCAGTCCCTGAACGTGAGTTACAACAGGCTGTGTGGCCAGATTCCG GTAGGTGGTAAGTTGCAGAGCTTTGATTACTCCAGTTATTTCCATAACAGGTGCTTGTGCGGAGCTCCACTTGGAAACTGCAAATAG
AA sequence Show only first row Show all	>Potri.006G058600.1 pacid=42770623 polypeptide=Potri.006G058600.1.p locus=Potri.006G058600 ID=Potri.006G058600.1.v4.1 annot-version=v4.1 MNTLFLSLLISSTLLSLSLSKELCNPQDKQVLLQIKKDFGDPYLLASWKSDTDCCTDWYQVECDSTTNRIISLTVFAGNLSGQIPAAVGDLPYLQNLVFR KLTDITGPVQPAIAKLVHLTFLRLDRLNLTGTVPDFLSQLKNLTYLDLSFNGFSGSIPSSLALLPNLGALHLDRNKLTGSIPESFGTFKGSVPDLYLSHN QLTGEIPASLGNMDFSVIDLSRNKLVGDASMLFGLNKTTNNVYLSRNLFEFNLSNVVFPSTMENLDINHNKIFGSIPPQMTQLPLQSLNVSYNRLCGQIP VGGKLQSFDYSSYFHNRCLCGAPLGNCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	0	1	Pt-PGIP.4
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219900 [exp]	1.41	0.9861
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	2.44	0.9779
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	2.64	0.9700
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	3.16	0.9724
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	4.00	0.9640
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	7.14	0.9639
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	7.74	0.9691
AT2G28690			Protein of unknown function (D...		Potri.009G027100 [exp]	13.03	0.9585
					Potri.004G221450 [exp]	15.16	0.9811
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223500 [exp]	20.00	0.9766

Compare expression of checked genes

Potri.006G058600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.