Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 1373 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1326 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1248 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1090 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 1073 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1047 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1015 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 919 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 910 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 894 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049100 [exp] 1428 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1274 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1259 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1252 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1150 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1135 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 1121 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1119 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1109 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 1389 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1389 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1092 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1089 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1088 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1066 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 996 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 909 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 902 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 788 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF06398 [poplar] [flax] Pex24p Integral peroxisomal membrane peroxin
Representative CDS sequence Show only first row Show all	>Potri.006G058900.5 pacid=42769601 polypeptide=Potri.006G058900.5.p locus=Potri.006G058900 ID=Potri.006G058900.5.v4.1 annot-version=v4.1 ATGATGCAGAAGCCACCGCAGGATGATTTTCTATTGAAAGAGACCAATCCCCATCTTGGAGGGGGAAGGATCACTGGCGACAAGCTTACGAGCACCTATG ATCTTGTGGAGCAGATGCAGTATCTTTATGTCCGGGTCGTTAAGGCCAAGGACTTGCCTGCGAAGGATGTTACAGGTAGTTGTGATCCTTACGTGGAAGT TAAACTTGGAAACTATAAGGGCACTACTCGGCATTTTGAGAAGAAGACGAACCCGGAGTGGAACCAGGTGTTTGCATTTTCAAAGGAGCGGATTCAGGCG TCGATGCTTGAGGTTACTGTTAAGGATAAGGATCTTGTGAAGGATGATTTCATTGGCCGGGTTTTATTTGATATGAATGAGATACCAAAGCGTGTTCCTC CTGATAGTCCTCTGGCACCACAGTGGTATCGGTTGGAGGATAGGAAAGGAGATAAATTTAAGGGGGAATTGATGCTAGCGGTATGGATGGGAACACAGGC AGATGAAGCTTTTCCAGAAGCATGGCATTCAGATGCTGCTACTGTTAGTGGAACAGATAGTCTTGCTAATATTCGGTCCAAGGTATATCTCTCCCCAAAA TTATGGTATTTGAGGGTCAATGTGATTGAAGCACAGGACCTGGTACCGAGTGATCAAGGCAGGTATCCAGAAGTATATGTTAAAGCTATCCTGGGAAATC AAGTCCTGAGAACAAGAGTTTCTCCTAGCAGGAGTATTAATCCTATGTGGAATGAGGACCTTATGTTTGTGGCATCAGAACCTTTTGAGGAGCCCTTGAT TTTGAGTGTGGAAGATAGAATTGCGCCCAACAAGGATGAAGTGTTGGGGAGATGTGCAATTCCAATGCATCATGTAGACAGAAGGTTGGACCATAACCCT GTGAACACTAGGTGGTTTAATCTGGAGAAACATGTTATTGTAGAAGGGGAAAAGAAGAAAGAAATAAAGTTTGCCAGCAGGATTCACATGAGGATCTGCT TGGAGGGTGGTTATCATGTTCTGGATGAATCAACACACTATAGTAGTGATCTTCGTCCGACAGCTAAACAGCTGTGGAAGCACAGCATAGGGGTACTTGA ATTGGGTATTCTCAATGCTCAGGGATTGATGCCCATGAAACCAAAGGATGGTCGGGGAACAACTGATGCATACTGTGTGGCAAAATATGGACAGAAGTGG GTTCGAACCAGAACCATCATTGACAGTTTCACGCCCAAGTGGAACGAGCAATATACTTGGGAGGTTTTCGATCCCTGTACTGTCATAACAATTGGGGTCT TTGATAATTGTCATTTGCATGGAGGGGACAAGCCCGGTGGGTCAAGGGATTCAAGGATCGGAAAGGTGCGAATCCGTCTTTCCACACTTGAAACTGACAG GGTTTACACACACTCCTATCCACTGTTGGTCCTGCATCGTAATGGTGTCAAAAAGATGGGAGAAATTCATTTGGCGGTTCGTTTTACATGCTCATCATTG CTCAATATGATGCACATGTACTCACATCCTTTGCTGCCAAAGATGCACTATATCCATCCACTGACTGTCAGCCAGCTAGATAGCTTGAGGCATCAGGCCA CTGTGATTGTGTCAGTGAGGCTGAGCCGGTCAGAGCCACCATTAAGAAAGGAGATTGTTGAATATATGCTGGATGTGGGGTCTCACATGTGGAGTATGAG AAGAAGTAAAGCCAACTTTTTCAGAATCATGAACGTTTTCGGTGGGCTAATTGCTCTAGGGAAATGGTTTGATCAGATATGCAATTGGAAAAACCCAATC ACCACTGTGCTGATTCACATTTTGTTTATAATCCTAGTCCTCTATCCAGAACTTATCTTGCCCACAATCTTCCTGTATCTCTTCCTGATTGGTGTCTGGC ATTATAGACGGAGGTCAAGGCATCCTCCTCACATGGACACTCGTCTCTCTCATGCGGAGTCTGCTCATCCCGATGAATTGGATGAGGAATTTGACACGTT CCCAACTTCTCAGTCTGCTGATATTGTAAGGATGAGATATGATCGTTTGAGAAGTATTGCAGGGAGGATTCAGACTGTTGTTGGTGATTTAGCTACTCAA GGGGAGAGGCTGCAATCTTTACTGAGCTGGCGAGACCCAAGGGCCACAGCTCTGTTTGTGCTCTTTTGTCTGATTGCTGCCATTGTTCTATATATTACTC CTTTCCAAGTTGTGGCAGTTCTCATTGGATTGTATGTGCTGAGACATCCCAGGTTCCGCCACAAACTTCCTTCAGTTCCACTCAATTTCTTCCGGCGGTT GCCAGCAAGAACCGATTCCATGCTGTGA
AA sequence Show only first row Show all	>Potri.006G058900.5 pacid=42769601 polypeptide=Potri.006G058900.5.p locus=Potri.006G058900 ID=Potri.006G058900.5.v4.1 annot-version=v4.1 MMQKPPQDDFLLKETNPHLGGGRITGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKERIQA SMLEVTVKDKDLVKDDFIGRVLFDMNEIPKRVPPDSPLAPQWYRLEDRKGDKFKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDSLANIRSKVYLSPK LWYLRVNVIEAQDLVPSDQGRYPEVYVKAILGNQVLRTRVSPSRSINPMWNEDLMFVASEPFEEPLILSVEDRIAPNKDEVLGRCAIPMHHVDRRLDHNP VNTRWFNLEKHVIVEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKHSIGVLELGILNAQGLMPMKPKDGRGTTDAYCVAKYGQKW VRTRTIIDSFTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKPGGSRDSRIGKVRIRLSTLETDRVYTHSYPLLVLHRNGVKKMGEIHLAVRFTCSSL LNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATVIVSVRLSRSEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMNVFGGLIALGKWFDQICNWKNPI TTVLIHILFIILVLYPELILPTIFLYLFLIGVWHYRRRSRHPPHMDTRLSHAESAHPDELDEEFDTFPTSQSADIVRMRYDRLRSIAGRIQTVVGDLATQ GERLQSLLSWRDPRATALFVLFCLIAAIVLYITPFQVVAVLIGLYVLRHPRFRHKLPSVPLNFFRRLPARTDSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57880			Calcium-dependent lipid-bindin...		Potri.006G058900 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	2.64	0.8888
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	5.83	0.8483
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.019G008400 [exp]	7.74	0.8462
AT3G56590			hydroxyproline-rich glycoprote...		Potri.006G031800 [exp]	8.36	0.7655
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	9.16	0.8481
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	14.69	0.8388
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	17.60	0.8134
AT5G10020			Leucine-rich receptor-like pro...		Potri.005G083000 [exp]	18.57	0.7813
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	20.61	0.7888
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	21.00	0.8155

Compare expression of checked genes

Potri.006G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.