Plant FIBer expression Database

Potri.006G059100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57890 877 / 0 Tubulin binding cofactor C domain-containing protein (.1.2)
AT2G42230 839 / 0 C-CAP/cofactor C-like domain-containing protein (.1.2)
AT4G39920 44 / 0.0002 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G049000
[exp]
1022 / 0 AT3G57890 852 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Potri.005G074700
[exp]
48 / 1e-05 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023821
[exp]
917 / 0 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10012025
[exp]
868 / 0 AT3G57890 835 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10016279
[exp]
780 / 0 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10021031
[exp]
756 / 0 AT3G57890 726 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10006364
[exp]
55 / 1e-07 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Lus10012318
[exp]
53 / 4e-07 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0391 CAP_C-like PF07986 TBCC Tubulin binding cofactor C
Representative CDS sequence
>Potri.006G059100.1 pacid=42768186 polypeptide=Potri.006G059100.1.p locus=Potri.006G059100 ID=Potri.006G059100.1.v4.1 annot-version=v4.1
ATGACAACAGAGATAACGTCCACGCCCGACCCGAATACAAATCCTGCTCCAACTCCAACTCCAACTCCGACTCCAACTCCAACTCCAAACCCGAATCCAA
GCTCCCTAATCCACCCACGCCGGGAGCCATTCGAGCACGGACTCTTACCGATCCCCAAACTAATCTTCCCTGACCCGACCCCAACCCTAATACAGCTCAA
ACAACAGCTCTCTACTCACAACCGAGTCAACTCTTCCTTACTCGCTGAGTCTCTCCAGATCTCCACCGACCACGCGAGGCTGATACTCGACACGCTCGCT
TCGGTTCTGCACTCTGATTCCGACCCGCTTGTGAAAGCCCGGCCCGATGAGGTTGATTCGGCTGGTGCCGATCTGCGTGATCTGATATTGTTTCTATATA
TTCAGTCTTACAAGAAATTGTTGCCGAGAACGCATAAAGATGCCGCTTCTGTTGCTGATGTTTGGCCGTCGACTTCAGCTTTTGATGGTTACCTGTCGGC
TTTATCGCCGCTTCAGCTTGTGCGTAGCAACAACCGCCGGTTTATGCCATCGCAGGCAGATGAAGAGGCTCATCAGTTGTCCTACCTACAAAAGCACATG
GCTAACATTCTCTCTCTTTTGGCAGAGCCTGTGGAAGGAGAAGGGGAAGGCGAAGGAGAAGGAGAAGAGTCTCTGGTTTTATCCATGGAAGGATTCGAGC
ACCTTGGATTTCTTCTTCAATTTGGTGACAAAGGATCTGAAGTAGTTACCTTAAGCCAAGCTGCCCCATTTTTTGCCAATTCAGATCCTGACATGCCTGC
CGTTCCTGCTCCTGCTACACAAGTCCATGATTGGATTTCACAGAATATATCATCTGCTTTGGAACATATTACTGAAAGAATTTCTGCCAAAGAAAATGGG
CCAGCCAATTCATCTGATTCTGATGTAGCCATGACTGATGCCTGTACAAGTTCTATCAAGACCCCACCTAGTGCTAGGGGTTCATGTTTTATCGAGGGGA
TCTCTAAGTCATCATTTGTAAAGCAACCATCAGATCTTAAAGGTTCTTCTTCTGTAAAGGTTCTGAATTGTCATGATTCCATCCTTTACATCTTAGCACC
TCTGAGATATGCTACCATTTATGGATGCTCTGATGCTACTATAGTCCTTGGAGCTGTTGGCAAGGCTGTAAGGATTGAACATTGTGAGCGAGTTCATGTT
ATTACAGCAGCTAAACGAGTCTGCATTGCCAATTGTCGCGAGTGTGTGTTCTTTCTTGGGGTAAATCAACGACCACTAATTGTTGGTGATAACCATAAGC
TACAGGTGGCACCATATAATACATTTTATTCAGAGTTGGAGGAGCACATGGCTGATGTAGGCATTGACGCAACCATCAACAAATGGGATGAAACTTTGGC
CTTGGGAGTGGTTGATCCCCATGATTCATTATCCCACCCTGCTGGTGTCTCTGATTTTCAAGCTGAACCAGCTGCACGGGTAGACCCTGACCAATTCACA
AACTTTCTGATTCCCAATTGGTTTGGAGCTGAATCCCCAGGGTCAACGAAAGACAACCCATTTCAATTACCCGAGGCTTACATGGCATCTCAGCAGAGAA
ATCAAAAGAATTTGGGAGAGACAAAGAAATTATTGAGGGAAGCTCCTCTTGAAGAAAATCAAAAGCGAGAATTGTCAAGTGCACTCCACCTGTTATTTAA
AGACTGGTTATATGCTTCAGGAAATGTCAGACAGCTTTACTGCCTACAAGGTGATTGA
AA sequence
>Potri.006G059100.1 pacid=42768186 polypeptide=Potri.006G059100.1.p locus=Potri.006G059100 ID=Potri.006G059100.1.v4.1 annot-version=v4.1
MTTEITSTPDPNTNPAPTPTPTPTPTPTPNPNPSSLIHPRREPFEHGLLPIPKLIFPDPTPTLIQLKQQLSTHNRVNSSLLAESLQISTDHARLILDTLA
SVLHSDSDPLVKARPDEVDSAGADLRDLILFLYIQSYKKLLPRTHKDAASVADVWPSTSAFDGYLSALSPLQLVRSNNRRFMPSQADEEAHQLSYLQKHM
ANILSLLAEPVEGEGEGEGEGEESLVLSMEGFEHLGFLLQFGDKGSEVVTLSQAAPFFANSDPDMPAVPAPATQVHDWISQNISSALEHITERISAKENG
PANSSDSDVAMTDACTSSIKTPPSARGSCFIEGISKSSFVKQPSDLKGSSSVKVLNCHDSILYILAPLRYATIYGCSDATIVLGAVGKAVRIEHCERVHV
ITAAKRVCIANCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSELEEHMADVGIDATINKWDETLALGVVDPHDSLSHPAGVSDFQAEPAARVDPDQFT
NFLIPNWFGAESPGSTKDNPFQLPEAYMASQQRNQKNLGETKKLLREAPLEENQKRELSSALHLLFKDWLYASGNVRQLYCLQGD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57890 Tubulin binding cofactor C dom... Potri.006G059100
[exp]
0 1
AT4G28300 Protein of unknown function (D... Potri.019G095400
[exp]
2.00 0.7632
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.003G135300
[exp]
3.46 0.6941
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Potri.005G028800
[exp]
7.48 0.6661 SNF4.3
AT5G64500 Major facilitator superfamily ... Potri.001G286600
[exp]
9.38 0.6546
AT1G48790 AMSH1 associated molecule with the S... Potri.015G045800
[exp]
9.48 0.6549
AT1G69010 bHLH bHLH102, BIM2 BES1-interacting Myc-like prot... Potri.008G112000
[exp]
11.13 0.5734
AT3G54620 bZIP BZO2H4, ATBZIP2... BASIC LEUCINE ZIPPER O2 HOMOLO... Potri.005G217500
[exp]
12.00 0.6589
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motif... Potri.001G423400
[exp]
18.33 0.6530
AT5G06830 unknown protein Potri.006G059500
[exp]
19.59 0.6154
AT4G04210 PUX4 plant UBX domain containing pr... Potri.014G157200
[exp]
22.38 0.6959

Potri.006G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.