Plant FIBer expression Database

Potri.006G059500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06830 708 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012023
[exp]
654 / 0 AT5G06830 622 / 0.0 unknown protein
Lus10016277
[exp]
650 / 0 AT5G06830 626 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05600 DUF773 CDK5 regulatory subunit-associated protein 3
Representative CDS sequence
>Potri.006G059500.2 pacid=42770264 polypeptide=Potri.006G059500.2.p locus=Potri.006G059500 ID=Potri.006G059500.2.v4.1 annot-version=v4.1
ATGCAGAATCCCGATGACATCCGAAATCTTCCAATCGACATCTCATTTTCTCGTCTCGGAGAATGGCTTGTTGATCGAAAACGAATCCCCGCCGATTGGA
GAAAACGAATTGCATCAATAAGAGCTCGGATTTCAAAAGAATTCACTTCACTCCCCAAAGAAATCGATCCCTATTTCCAAACCCTAGACCCTGAAGGGAT
AGGGTACTTAGAGGCTAAAAATATTTATGAAATTCTTATGAAATCGAATCCAGAAAGCCGTAACATTTTTGGCCGGCTATCAGGTGCTGCTGGGGCCTGG
GAGGCAATTGTGCGTTCTTTCGAGAAAGATTATGTTTACCTTGGTGAAGCTGCGCAAATAATCATCCAAAATGTGAATTATGAAATTCCGTATCAGAAAA
AGCAGGTGCAAAAGATCCAGCAAATACTGGCGGAGCTAGAGCGCAAGGAAACTGATATAAAAAGAAGTGCAGCTCTTTCTGCGACTAAATATGTTGAGGC
TTGTCAAGAGCTTGGATTGCAAGGAAACAATGTGAGGGTTGAGCTTTTAGAGACTGCAAAATCACTTCCAAGCACATTTAGCAAAATTCTGGAAGTTATA
AACAGCGATACCATGTCACAGGCAATAGAGTACTATTCCAACTTCGTCAAAGATGTTCATACGGAAAAGGATAAACCTTTGAGATCTGTGTTGTTGAACT
TGAAAGATATTCGCGGGAATCCTCCTTCTCTGGATGTTTGTGCTGACCCTGTGATCCTTGATTCTTCAAATATTCAATTGGATTTGGATGAATCAAACCA
TGAGAGAGGGGACATGGATGTTGCTGTTAATAATATTGACTGGGATATTTCTGTTGATGGTGCTGATATTGACTGGGATATTGGCACTGTAGAAGAAACA
GATGATGGTGGTAATGGTTTAGGTCCTTATGAAATCGTAAATGCCAGTGACATCTCGCAGAACTCTTCACAAAATGAAGCTGTAGAATCTGGTGAGACTC
CATTAAAAAAAGAGGAAGAAAATGTTCATACTGAGATTTCTGTATCAGAAATTTGTTGGGATATTAGTGTTGAAACACCTCAAGTTGATGCAATCAATGA
CACTAATTTGGTAAACATGGGTTTGGAAAATCAGACATATGTTCTAGATACTATAACTCACACCCCGGGAATGAAGGAAGGCAGGAGCCAGCTTTTGGAT
ACAGAATATCGGAATAAAATTCTTGACGATTTATACGAGATAAAAGCATTTTTGAGCCAAAGATTGGCAGAGTTGAGTAATGAAGAGACCATGTCTTTGC
AACATCAAGTCCAGTCGGTTGCTCCCTTGGTGCTGCAGCAGTATACTCCTGATGCTATTGATACAATGTCATCTAATGTTTCTTTGGCCATTTCTTTACT
GACAAATGGGAAAACAAGAGACTTGATTATGCTTCTTAACTCTAAAAGATATCTGGACAGACTAGTGAGTACATTGGAAGCAAAGAAGCATCATGAGTTG
AAATTAAAAGAGGGGTTAAAAGATGTGGCTGCTAAACGCATGGAACTTCACAATTCTATATCTTCATCATGGCCAAAGCAGGAAGCAGCTCTTGCTAAAA
CCAGGGAGCTGAAGAAACTTTGTGAGAGGACACTCTCGTCCATGTTTGATGGAAGACCTGTTAATATAATCGGAGAGATCAATGCCTTATTGAGCAGTGG
AATTGGTGCGTAA
AA sequence
>Potri.006G059500.2 pacid=42770264 polypeptide=Potri.006G059500.2.p locus=Potri.006G059500 ID=Potri.006G059500.2.v4.1 annot-version=v4.1
MQNPDDIRNLPIDISFSRLGEWLVDRKRIPADWRKRIASIRARISKEFTSLPKEIDPYFQTLDPEGIGYLEAKNIYEILMKSNPESRNIFGRLSGAAGAW
EAIVRSFEKDYVYLGEAAQIIIQNVNYEIPYQKKQVQKIQQILAELERKETDIKRSAALSATKYVEACQELGLQGNNVRVELLETAKSLPSTFSKILEVI
NSDTMSQAIEYYSNFVKDVHTEKDKPLRSVLLNLKDIRGNPPSLDVCADPVILDSSNIQLDLDESNHERGDMDVAVNNIDWDISVDGADIDWDIGTVEET
DDGGNGLGPYEIVNASDISQNSSQNEAVESGETPLKKEEENVHTEISVSEICWDISVETPQVDAINDTNLVNMGLENQTYVLDTITHTPGMKEGRSQLLD
TEYRNKILDDLYEIKAFLSQRLAELSNEETMSLQHQVQSVAPLVLQQYTPDAIDTMSSNVSLAISLLTNGKTRDLIMLLNSKRYLDRLVSTLEAKKHHEL
KLKEGLKDVAAKRMELHNSISSSWPKQEAALAKTRELKKLCERTLSSMFDGRPVNIIGEINALLSSGIGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06830 unknown protein Potri.006G059500
[exp]
0 1
AT4G35240 Protein of unknown function (D... Potri.009G142900
[exp]
3.74 0.6424
AT1G60900 U2 snRNP auxilliary factor, la... Potri.011G050400
[exp]
6.92 0.6412
AT2G30530 unknown protein Potri.013G160100
[exp]
11.04 0.6649
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.001G399400
[exp]
13.74 0.6319 Pt-PPI1.4
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Potri.001G109500
[exp]
14.62 0.6683
AT4G36210 Protein of unknown function (D... Potri.007G016100
[exp]
15.90 0.5984
AT4G08180 ORP1C OSBP(oxysterol binding protein... Potri.019G015111
[exp]
16.70 0.5879
AT4G27500 PPI1 proton pump interactor 1 (.1) Potri.011G119700
[exp]
18.00 0.5809
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.006G215200
[exp]
18.76 0.6519 RSZ33.2
AT3G57890 Tubulin binding cofactor C dom... Potri.006G059100
[exp]
19.59 0.6154

Potri.006G059500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.