Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 375 / 1e-128 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 319 / 6e-107 Protein phosphatase 2C family protein (.1) AT3G51470 307 / 2e-102 Protein phosphatase 2C family protein (.1) AT1G48040 275 / 2e-89 Protein phosphatase 2C family protein (.1) AT3G62260 269 / 2e-87 Protein phosphatase 2C family protein (.1.2) AT3G17250 258 / 3e-82 Protein phosphatase 2C family protein (.1) AT5G24940 162 / 2e-45 Protein phosphatase 2C family protein (.1) AT5G10740 158 / 7e-45 Protein phosphatase 2C family protein (.1) AT1G78200 154 / 7e-44 Protein phosphatase 2C family protein (.1.2) AT1G07160 156 / 8e-44 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115100 [exp] 656 / 0 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 377 / 2e-129 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 375 / 6e-129 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 333 / 3e-112 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 315 / 3e-105 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 312 / 5e-104 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 310 / 4e-103 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 301 / 2e-99 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 268 / 1e-86 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001682 [exp] 531 / 0 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 374 / 2e-128 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 371 / 2e-127 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10030731 [exp] 332 / 1e-111 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 326 / 2e-109 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 323 / 3e-108 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 307 / 3e-101 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030115 [exp] 293 / 2e-97 AT2G25620 234 / 1e-74 DNA-binding protein phosphatase 1 (.1) Lus10017106 [exp] 277 / 3e-90 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10037832 [exp] 276 / 7e-90 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G059600.3 pacid=42767118 polypeptide=Potri.006G059600.3.p locus=Potri.006G059600 ID=Potri.006G059600.3.v4.1 annot-version=v4.1 ATGTGTGTAAAGGATGCAGAGCAAGAAATAGAGACCCCAATTGACAATAATAGTAATAGCAACAAGATGCAATCTTGGCCTTTGCATTGTGACCTCTTGC AAACCCGGATGGAGAATTTTGATCAAGACTCTTCTTTGATTTGTTCTAGTGGTGGGATTAGTGTTGCCAACTCTTATCCTCTGGAAAGCATCTGCGAGGA TAGAGTGGTCACAGAAAGGAAACAGAATCTGTTAACAGATTTTTTCCCCACCCTTCGCTCAGGAGAATGGTCTGATATTGGCGGTCGGCCTTACATGGAA GACACACACATTTGCATCAGTGACTTGGCTAAGAAGTTTGGTTCCAATTTGCTCATCAGTGAGCATGCTATTTCTTTCTATGGTGTATTTGATGGGCATG GAGGAAAGAGTGCAGCACATTTTGTCTGTGAACATTTACCAAGAGTCATTGTTGAGGATGCTGATTTCCCTGTAAAACTTGAGAAAGTGGTCGCAAGGTC ATTCATTGAGACTGATGCTGCATTTGAAAAGTCATGCTCCCTTGAGTCAGCCCGTTCTTCTGGCACTACTGCACTTACAGCAATGATATTCGGGAGGTCA TTACTTGTGGCAAATGCTGGTGATTGTCGGGCAGTATTATCACGAGGTGGAGTAGCTAAGGAAATGTCAGAGGATCACAGACCTTGCTGCATTAAAGAAA GGACTAGAATTGAGTCCTTAGGTGGATTCATTGATGATGATTATCTAAATGGTCAGTTAGGTGTTACCCGTGCATTAGGTGATTGGCATCTCGAAGGAAT GAAGAAAACAGGTGACAAAAGTGGCCCATTAAGTGCTGAACCAGAACTTAAATTGGTTACGTTGACCAAGGAAGACGAGTTTTTGATAATCGGAAGTGAT GGAATATGGGATGTATACTCAAACCAAAATGCAGTAGATTTTGTTAGGAAGAGACTTCAAGAGCACAATGATGTGAAGCAGTGCTGCAGAGAAATGGTTG GGGAAGCAATAAAACGGGGAGCAACCGACAACTTGACCGTTGTAATTGTTAGCTTTCACTTGGAGCCACCGCCACCGGTGGTGGTACAGAGGACAAGATT CAGGCGGAGCATTTCCGCTGAGGGACTTCAGAATCTCAAATGCTTGCTAGAAGGTAATGCTTAA
AA sequence Show only first row Show all	>Potri.006G059600.3 pacid=42767118 polypeptide=Potri.006G059600.3.p locus=Potri.006G059600 ID=Potri.006G059600.3.v4.1 annot-version=v4.1 MCVKDAEQEIETPIDNNSNSNKMQSWPLHCDLLQTRMENFDQDSSLICSSGGISVANSYPLESICEDRVVTERKQNLLTDFFPTLRSGEWSDIGGRPYME DTHICISDLAKKFGSNLLISEHAISFYGVFDGHGGKSAAHFVCEHLPRVIVEDADFPVKLEKVVARSFIETDAAFEKSCSLESARSSGTTALTAMIFGRS LLVANAGDCRAVLSRGGVAKEMSEDHRPCCIKERTRIESLGGFIDDDYLNGQLGVTRALGDWHLEGMKKTGDKSGPLSAEPELKLVTLTKEDEFLIIGSD GIWDVYSNQNAVDFVRKRLQEHNDVKQCCREMVGEAIKRGATDNLTVVIVSFHLEPPPPVVVQRTRFRRSISAEGLQNLKCLLEGNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G059600 [exp]	0	1
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G118401 [exp]	4.24	0.8796
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	14.69	0.8782	RD21.1
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074700 [exp]	15.23	0.8494
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.007G088018 [exp]	16.52	0.8655
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	20.42	0.8765	Pt-ELSA.1
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	24.08	0.8730
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.009G010350 [exp]	35.11	0.8629
AT5G63520			unknown protein		Potri.004G005700 [exp]	38.26	0.8675
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.009G019200 [exp]	38.41	0.8593
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	38.47	0.8617

Compare expression of checked genes

Potri.006G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.