Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25270 344 / 2e-108 Ubiquitin-like superfamily protein (.1) AT5G42220 222 / 2e-61 Ubiquitin-like superfamily protein (.1) AT5G11080 82 / 2e-16 Ubiquitin-like superfamily protein (.1.2) AT2G17200 62 / 7e-10 DSK2 ubiquitin family protein (.1) AT2G17190 57 / 3e-08 ubiquitin family protein (.1) AT2G36170 53 / 4e-08 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G52590 53 / 4e-08 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT3G62250 52 / 1e-07 UBQ5 ubiquitin 5 (.1) AT1G23410 52 / 1e-07 Ribosomal protein S27a / Ubiquitin family protein (.1) AT2G47110 52 / 1e-07 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115500 [exp] 1112 / 0 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 248 / 2e-70 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 246 / 8e-70 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 63 / 5e-10 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.004G194000 [exp] 56 / 4e-09 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.009G166000 [exp] 58 / 2e-08 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.004G205100 [exp] 57 / 3e-08 AT2G17200 425 / 3e-143 ubiquitin family protein (.1) Potri.015G007100 [exp] 52 / 5e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 52 / 5e-08 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040001 [exp] 663 / 0 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 453 / 7e-147 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10034563 [exp] 215 / 3e-62 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10021830 [exp] 184 / 2e-48 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10014433 [exp] 63 / 6e-10 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 62 / 1e-09 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10008873 [exp] 53 / 5e-08 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10008710 [exp] 53 / 1e-07 AT1G79650 248 / 2e-82 RADIATION SENSITIVE23B, Arabidopsis thaliana aldehyde oxidase 1, Rad23 UV excision repair protein family (.1.2.3.4) Lus10030894 [exp] 52 / 1e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 52 / 1e-07 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Potri.006G059700.2 pacid=42770157 polypeptide=Potri.006G059700.2.p locus=Potri.006G059700 ID=Potri.006G059700.2.v4.1 annot-version=v4.1 ATGGGAAGTAATGTTGCTGATAAAATTCCGAAAGCTGGTGAGGCGGAAGGTTCTGAAACAAATATTGAAATAAAAATAAAAACATTGGATTCTCAAACCT ATACTTTGAGAGTGGATAAACAGATGCCAGTTCCTGCTTTGAAAGAACAGATTGCTTCTGTCACTGGTGTGCTATCAGAACAACAACGTCTAATATGCCG TGGAAAAGTTTTAAAAGATGACCAATTACTCTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATATGGTGGTTCGGCAACCTATACCGCAATCATCT GAGGGCCTATCCAATCATCCAGGCAATGATCCTGCATCAGGTTCAAGCCGCCACACTGGTCAGGTGGCTCCCAGTGTTGTAATAGAAACTTTTAGTGTGC CTGATCAAGGGGATGGAGTTCCTCCAGAAATCAGTAGGATTGTCTCTGCTGTCCTTGGATCTTTTGGGTTTTCAAATATCGAAGGTGGCAGTGAAGGGGT AGATGTTGTCAGGGAGCGTGGTATGTCAAGAACATCAGCTGCTGGTGGTAGCACGGACACAAGCCAGCTGCAATCTGAACAAACTGGCACCAGGGGCCTG TCTGACAGAGCACAAAATATTTTTGGGCTTCCATCAGCAGTTTCCTTGGGGTCAATGAATCCTCCTGTAATTCCTGACTCTCTGACAACATTGTCCCAAT ATCTGAGCCATATGAGGCGAGAATTTGATGCCATTGGCAGAGTTGGGGAAAACAATGCACAAGCAGATGCTGCACGCAGGACTGAGCAAATAGATTCTAA TTCCATGTCACAATCAGGAACTGGACAAGAAAGGCTTCCGACACCTGCATCCTTGGCAGAAGTGATTCGGTCTAGTAGACAATTACTCACCGAACAAGTT GCAGAATGCTTACTTCAACTTGCCATGCAACTAGAGAATCAAGCAGATATTACTGATCCTGCAGTGCGACACACCACTCAGTCTAGTGCATTGAGAACCG GAGTCCAACTTCATAATTTAGGTGCTCTTCTACTTGAACTTGGACGTACAATCATGACATTACGACTAGGTCAAGCACCGTCTGAAGCCATTGTTAATGC TGGCCCTGCAATTTTTATCAATCAATCTGGTCCTAATCCTCTAATGGTTCAGCCCCTTCCTTTTCAACCGGGGACTAGCTTTGGTGCTATCCCTGTGGGA TCCAGGCAACCGGGATCTGGTTTGGCTAATAGTACTGGTACTGGTACTGGGATTCTTCCAAGGCGAATTGATATACAAATACGAAGAGGTTCATCAACTG CTACTCCCAACAATCGTGAGGACCGTGGTCAGACACAGCAGACTGCTGGGCTGAGAAACCCACCAACCATTTCTGGTGGTGAAAATCCTAGTAATCAAAC AACTTCAAGGGTCTCAGAGGGTTCATCTTTTGCTGGGGAGGCTGTACGAGTGGTGCCTCTTAGAACCGTGGTTGCAGCCGTTCCTGGCACATTTGGCCGC CTTCCTTCTGATTCGTCTGGTAATTCTATAGGTCTGTACTATCCTGTTCTCGGAAGATTTCAACATGTAGCTTCTGGGCATGGGAATGGTGGACAAGGAT CTCAAGCATCTGGTGAGCATCATGCTGCTGGGGTCCAGACTGACCAGCCGCCAACCCTTGAACCTGCTGTACACCGGCAAAACACCGAACAACGCACAAG AGATGGATCACTGCCACCAAATTCAAGACAAGAGCCTTCTATTTCTCGCAGTATAAGTATCAACATTCTGTCAGCTAGTGGGTCCCAAAACAACCTGGAT TCTGAGCAACCTATCCCCAGCGGTATTATGCAGCTCCTGAGGACCATCTTACCTGGCGATGTCCACATGGAGGATGCCAGCTCACGATTAACAACTACTA GTTCTGTCCTTGAGACTGCAGAACCATCTACTGCTACTGCAGAAGCGGAAGCGGAAGTGGAACCAAGAGCTACTGATGAGGGGATATTTTTGTCTAATCT GCTTCGTGAGATCATGCCCCTCATATCTCAAAGTGGTGGTGCAGAACCCAATGACATACCTCCAGTAGAAGCATGCAGCTCTGGGCATCAGAGGCCTCAA GATTCTTCAACCAATGCCGAAAACTCTGGTGTTGGAACATCTCATCGCTATAGTGATACTGAACCAAGCCCACCAAATTCAAAACGCCAAAAGACTGAGT GA
AA sequence Show only first row Show all	>Potri.006G059700.2 pacid=42770157 polypeptide=Potri.006G059700.2.p locus=Potri.006G059700 ID=Potri.006G059700.2.v4.1 annot-version=v4.1 MGSNVADKIPKAGEAEGSETNIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQPIPQSS EGLSNHPGNDPASGSSRHTGQVAPSVVIETFSVPDQGDGVPPEISRIVSAVLGSFGFSNIEGGSEGVDVVRERGMSRTSAAGGSTDTSQLQSEQTGTRGL SDRAQNIFGLPSAVSLGSMNPPVIPDSLTTLSQYLSHMRREFDAIGRVGENNAQADAARRTEQIDSNSMSQSGTGQERLPTPASLAEVIRSSRQLLTEQV AECLLQLAMQLENQADITDPAVRHTTQSSALRTGVQLHNLGALLLELGRTIMTLRLGQAPSEAIVNAGPAIFINQSGPNPLMVQPLPFQPGTSFGAIPVG SRQPGSGLANSTGTGTGILPRRIDIQIRRGSSTATPNNREDRGQTQQTAGLRNPPTISGGENPSNQTTSRVSEGSSFAGEAVRVVPLRTVVAAVPGTFGR LPSDSSGNSIGLYYPVLGRFQHVASGHGNGGQGSQASGEHHAAGVQTDQPPTLEPAVHRQNTEQRTRDGSLPPNSRQEPSISRSISINILSASGSQNNLD SEQPIPSGIMQLLRTILPGDVHMEDASSRLTTTSSVLETAEPSTATAEAEAEVEPRATDEGIFLSNLLREIMPLISQSGGAEPNDIPPVEACSSGHQRPQ DSSTNAENSGVGTSHRYSDTEPSPPNSKRQKTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	0	1
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	1.41	0.7909	SDG913,EMB173.1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	1.41	0.7939
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.010G141700 [exp]	1.73	0.7816
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	2.82	0.7778
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	4.24	0.7548
AT3G25910			Protein of unknown function (D...		Potri.018G070500 [exp]	6.32	0.7775
AT1G43245			SET domain-containing protein ...		Potri.005G193500 [exp]	9.38	0.7484	SDG954
AT1G13570			F-box/RNI-like superfamily pro...		Potri.008G110400 [exp]	10.90	0.7648
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	13.63	0.6928	Pt-CIPK24.1
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.008G027000 [exp]	14.96	0.7133

Compare expression of checked genes

Potri.006G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.