Plant FIBer expression Database

Potri.006G060100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47910 308 / 9e-107 CRR6 chlororespiratory reduction 6 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038104
[exp]
328 / 1e-114 AT2G47910 294 / 3e-101 chlororespiratory reduction 6 (.1.2)
Lus10008032
[exp]
267 / 9e-90 AT2G47910 250 / 2e-83 chlororespiratory reduction 6 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08847 Crr6 Chlororespiratory reduction 6
Representative CDS sequence
>Potri.006G060100.2 pacid=42767511 polypeptide=Potri.006G060100.2.p locus=Potri.006G060100 ID=Potri.006G060100.2.v4.1 annot-version=v4.1
ATGGCTACAATCATCAAACCTTTTTTGCCAAATTTTCCTTTGCAAAAACAGACACTACCCTTGAACTCTCAATGGATTTCTTGCAAACCAATCTCAGATT
CAGTCACTACTTTGCCAGTTTCACACTTCAGACAACAAGGACAATTTGCAGCTGCTGTTGCTTTCAATCCCTCTGGAAATTTCGACCTTCCTATATATGA
TGGAGAAGAGGATTCAACTGAAGTTAAACCACCTCCAATGCCCCCAACCGAAGGCAGATTCGAGATTGTAATCGATAATGATATAGTTCGCCGTCTTGAC
TTGTCCCCGTTTCACAACGTCACAGGGTTTGTTTCACCCTCGCGAGTGGAGCCGAAAGAGTTTCTTGAGCGTACAATTGGATTTACTATTAACTACACGA
GAGAAGATCCGATGGATCCTCGAGAACTATCAGAGTTCCCTGATATAAGACTCTGGTTTTTGAGGCTTGATGCTACTTATCCTTGGTTACCTGTCTTGTT
GGACTGGCGAGCGGGAGAACTGGCTCGTTATGCAGCAATGTTAGTCCCTCACCAGGTGAATATGAAATTGGGAGTAGTTTTTAATCCTGAGGCACTGGAA
TTGTTTGTCATGAAGAAAGTTTTCGTCGTGTACTCTTGGTTGCAGCAGCAGAATGTTCCAAAGCCTAGACTCAAGACTAGTGACATGGCTAGGATGCTTG
GATTTGGGATAGGAAATGAACTCTTTGACTTGATTGATCAACATTCTCCGGCTTCATAA
AA sequence
>Potri.006G060100.2 pacid=42767511 polypeptide=Potri.006G060100.2.p locus=Potri.006G060100 ID=Potri.006G060100.2.v4.1 annot-version=v4.1
MATIIKPFLPNFPLQKQTLPLNSQWISCKPISDSVTTLPVSHFRQQGQFAAAVAFNPSGNFDLPIYDGEEDSTEVKPPPMPPTEGRFEIVIDNDIVRRLD
LSPFHNVTGFVSPSRVEPKEFLERTIGFTINYTREDPMDPRELSEFPDIRLWFLRLDATYPWLPVLLDWRAGELARYAAMLVPHQVNMKLGVVFNPEALE
LFVMKKVFVVYSWLQQQNVPKPRLKTSDMARMLGFGIGNELFDLIDQHSPAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47910 CRR6 chlororespiratory reduction 6 ... Potri.006G060100
[exp]
0 1
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.009G047700
[exp]
2.00 0.9827
AT1G43670 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabid... Potri.002G069000
[exp]
3.00 0.9759
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Potri.009G081600
[exp]
3.46 0.9821 MDHG.1
AT3G09050 unknown protein Potri.006G096700
[exp]
4.00 0.9813
AT5G23060 CaS calcium sensing receptor (.1) Potri.015G052200
[exp]
4.58 0.9817
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.006G183900
[exp]
5.91 0.9795
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Potri.001G416400
[exp]
6.32 0.9761
AT1G20810 FKBP-like peptidyl-prolyl cis-... Potri.005G254900
[exp]
7.00 0.9785
AT4G26530 Aldolase superfamily protein (... Potri.011G165000
[exp]
7.41 0.9727 Pt-FBA.1
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Potri.002G180400
[exp]
9.79 0.9790 TMP14.1

Potri.006G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.