Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41040 462 / 4e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G78140 310 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G13710 43 / 0.0002 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G23360 42 / 0.0004 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G20330 42 / 0.0005 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 41 / 0.0007 SMT3 sterol methyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120000 [exp] 594 / 0 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G095100 [exp] 324 / 7e-110 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G165700 [exp] 291 / 4e-97 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 49 / 2e-06 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.002G016300 [exp] 46 / 3e-05 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.005G245800 [exp] 45 / 3e-05 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 45 / 3e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 44 / 0.0001 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 41 / 0.0007 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008815 [exp] 493 / 2e-176 AT2G41040 451 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013038 [exp] 53 / 8e-08 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 51 / 6e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10023995 [exp] 45 / 4e-05 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.006G060400.1 pacid=42769708 polypeptide=Potri.006G060400.1.p locus=Potri.006G060400 ID=Potri.006G060400.1.v4.1 annot-version=v4.1 ATGGCAATGGCTTCCACTTCTCTTCACCAATCTTTATCTCCAAAGTACCCTCATCTTTTTCATAATTCACGGTTTCCTCCCACTCGTCTCCGGTTCACCT CCCTTCGGTTTCCCTCTACAATTCGCGCCACTTCAGCTGTTTCTCTTGAACCTGAATTAAGCACACAGCAGAGTCAAACTTTAGAGGTTGACCCATTTGC ATGCCCAATATGCTACCAACCTCTGATAAGAAAAGGTCCTAAAGGTTTTAACTTGCCAGCAATCTACCGGTCTGGTTTCAAGTGTAATAGATGCAACAAA ACATACTCCAGCAAAGAAAACTATCTAGACCTTACCATTACTGCTGGAATGAAGGACTACACTGAAGTCAAACCAGTTCGTACTGAGCTATTCCGGAGTC CACTTGTTTCATTCTTGTATGAACGTGGCTGGCGTCAAAATTTTAATCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAAAATGGCTCAGGAGTACTT CAAACCCACAGAAGGTGGTCTTCTAGTAGATGTTAGCTGTGGTAGTGGTTTATTTTCCAGAAAATTTGCCAAATCTGGAACCTATTCTAAAGTTATTGCA CTTGATTTTTCTGAAAATATGCTTCGCCAATGCTATGATTTCATCAAGCAAGATGATACTATCTCAACGAGAAATCTTGCTCTCGTCAGGGCAGATGTTT CAAGACTTCCCTTTGCTTCAGGTTCAGTTGATGCTATTCATGCTGGTGCTGCCTTGCATTGCTGGCCATCTGCTTCCAATGCTGTTGCTGAAATTTGCCG TGCTTTGCGAAGTGGTGGAGTCTTTGTTGGGACCACTTTTCTTCAATACAGCTCAACCACTTCCTGGATAGAACGACCTTTCCGAGAGAGGATTATGCAA AACTACAACTATTTCACAGAGGAGGAAATCGAAGACTTGTGCACAACATGTGGTCTTACCAACTACACAAGAATTGTTCAGCGATCCTTCATCATGTTCT CTGCTCAGAAGCCATGA
AA sequence Show only first row Show all	>Potri.006G060400.1 pacid=42769708 polypeptide=Potri.006G060400.1.p locus=Potri.006G060400 ID=Potri.006G060400.1.v4.1 annot-version=v4.1 MAMASTSLHQSLSPKYPHLFHNSRFPPTRLRFTSLRFPSTIRATSAVSLEPELSTQQSQTLEVDPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNK TYSSKENYLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIA LDFSENMLRQCYDFIKQDDTISTRNLALVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVAEICRALRSGGVFVGTTFLQYSSTTSWIERPFRERIMQ NYNYFTEEEIEDLCTTCGLTNYTRIVQRSFIMFSAQKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	0	1
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Potri.006G150700 [exp]	2.64	0.9727
AT2G03420			unknown protein		Potri.010G161400 [exp]	3.00	0.9774
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.009G047700 [exp]	3.16	0.9798
AT1G22850			SNARE associated Golgi protein...		Potri.013G099600 [exp]	3.16	0.9707
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Potri.010G110400 [exp]	5.29	0.9789
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	6.00	0.9770
AT5G51010			Rubredoxin-like superfamily pr...		Potri.015G108100 [exp]	8.30	0.9643
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	8.36	0.9769	PETC.1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.015G078100 [exp]	11.22	0.9653
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	11.48	0.9748

Compare expression of checked genes

Potri.006G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.