Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) AT3G60670 184 / 1e-57 PLATZ transcription factor family protein (.1) AT1G31040 155 / 9e-47 PLATZ transcription factor family protein (.1) AT1G32700 114 / 3e-31 PLATZ transcription factor family protein (.1.2) AT1G76590 112 / 3e-30 PLATZ transcription factor family protein (.1) AT4G17900 112 / 3e-30 PLATZ transcription factor family protein (.1.2) AT1G21000 111 / 8e-30 PLATZ transcription factor family protein (.1.2) AT1G43000 106 / 5e-28 PLATZ transcription factor family protein (.1) AT2G27930 99 / 2e-25 PLATZ transcription factor family protein (.1) AT5G46710 97 / 3e-24 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G116000 [exp] 396 / 1e-141 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 174 / 6e-54 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 167 / 4e-51 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 164 / 5e-50 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 152 / 1e-45 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 122 / 2e-34 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 120 / 2e-33 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 117 / 2e-32 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 117 / 5e-32 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008814 [exp] 288 / 2e-98 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 283 / 6e-96 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 279 / 8e-95 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 264 / 4e-89 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 173 / 1e-53 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 171 / 2e-52 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 124 / 3e-35 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10000482 [exp] 119 / 1e-32 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 119 / 1e-32 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 119 / 3e-32 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [poplar] [flax] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Potri.006G060500.1 pacid=42767625 polypeptide=Potri.006G060500.1.p locus=Potri.006G060500 ID=Potri.006G060500.1.v4.1 annot-version=v4.1 ATGGGAACTCAAAAGCCTGCATGGTTGGAAGCTCTTTACGCACAGAAGTTCTTTGTGGGGTGCTCTTATCATGAAACTGCGAAGAAGAATGAAAAGAACG TGTGTTGTTTGGATTGTTGCATTAGTATTTGCCCTCATTGTATACCATCTCATCGCTTCCATAGGCTCCTTCAAGTTCGTCGTTATGTTTATCATGACGT TGTCCGATTAGAAGACATCGAAAAGCTGATAGATTGCTCAAATGTTCAGGCCTATACTATAAATAGTGCTAAAGTGGTGTTTATCAAGAAGAGACCTCAG AACAGGCAATTCAAAGGGGCCGGAAACTATTGTACTTCCTGTGACAGAAGCCTTCAAGAACCCTTTGCCCATTGCTCTCTTGGCTGCAAGGTGGACTTTG TGCTGAAACATTACAAGGATCTTTCTCCATACTTGAGGAGATGCAACACATTAACTCTTGGGCCTGACTTCTTTATCCCTCAAGATTTAGCAGATGATGA GATGACCAATGAGACACCTCATTCAACAATCGTGGACTCCGATGAGCCAATGAGCTGGTCTTCGAGTTCATCGGGCTCCGAAAACATGAGCATGGCCAGC AGTGAGATTGTACGGAAGAAGAGAAGTGGATTATACGTATGTGCAAGATCGATGAATAAGGTTTCTGATGAGGACATTGCTTCGAGCATGAGTAGGAGAA AAGGCATTCCTCATCGATCTCCTTTATGTTAG
AA sequence Show only first row Show all	>Potri.006G060500.1 pacid=42767625 polypeptide=Potri.006G060500.1.p locus=Potri.006G060500 ID=Potri.006G060500.1.v4.1 annot-version=v4.1 MGTQKPAWLEALYAQKFFVGCSYHETAKKNEKNVCCLDCCISICPHCIPSHRFHRLLQVRRYVYHDVVRLEDIEKLIDCSNVQAYTINSAKVVFIKKRPQ NRQFKGAGNYCTSCDRSLQEPFAHCSLGCKVDFVLKHYKDLSPYLRRCNTLTLGPDFFIPQDLADDEMTNETPHSTIVDSDEPMSWSSSSSGSENMSMAS SEIVRKKRSGLYVCARSMNKVSDEDIASSMSRRKGIPHRSPLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	0	1
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	6.16	0.8523
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	14.52	0.8570	CYP51.2
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	16.24	0.8189
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	22.36	0.8218
AT5G01700			Protein phosphatase 2C family ...		Potri.016G127900 [exp]	22.36	0.7970
AT4G34660			SH3 domain-containing protein ...		Potri.009G123200 [exp]	25.45	0.8037
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	34.46	0.8169
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	35.09	0.7611
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	50.86	0.8095
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G122800 [exp]	57.06	0.7458

Compare expression of checked genes

Potri.006G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.