Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 580 / 0 unknown protein AT2G25270 485 / 3e-167 unknown protein AT1G80540 380 / 5e-126 unknown protein AT1G71110 367 / 1e-120 unknown protein AT5G67550 73 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120200 [exp] 794 / 0 AT2G12400 596 / 0.0 unknown protein Potri.018G023200 [exp] 553 / 0 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 551 / 0 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 377 / 1e-124 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 142 / 2e-36 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 137 / 1e-34 AT5G67550 182 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008028 [exp] 620 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 606 / 0 AT2G12400 616 / 0.0 unknown protein Lus10001945 [exp] 535 / 0 AT2G25270 650 / 0.0 unknown protein Lus10013492 [exp] 388 / 4e-129 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 366 / 3e-120 AT1G71110 587 / 0.0 unknown protein Lus10001929 [exp] 362 / 8e-119 AT2G25270 457 / 3e-156 unknown protein Lus10007962 [exp] 327 / 1e-105 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 298 / 2e-94 AT2G25270 352 / 7e-116 unknown protein Lus10038102 [exp] 281 / 3e-88 AT2G25270 468 / 5e-161 unknown protein Lus10026050 [exp] 269 / 7e-84 AT2G25270 328 / 4e-107 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G060600.1 pacid=42769702 polypeptide=Potri.006G060600.1.p locus=Potri.006G060600 ID=Potri.006G060600.1.v4.1 annot-version=v4.1 ATGTCATGCAATAACAGATCAAATCCGCCATTGTTTTTTCTCCTGGCCTTTGTTTTCCTTTTCTTTCTCTTCACTTCTTCAACAGCAACTCCCAGTTCCG CAACTTCCCATTCTCTATCCCTTTCCATCTCAGATGATGTGGTCGGTGAGAGAGAGAATGATGGTGTGCTGGTTTCATGGAAGGCTAGGAGGCATCTTGC TGAAGAAGGGAACACAACATCTTCTTTGATATTGGCTGCAAAGAGAACAAGAAGGAGAGACCCTTTAGATAACTCTAAATTCTACACTTCTGGTTATAAT ATCAGCAATAAACATTATTGGGCTTCTGTTGGTCTTACCGCGGCTCCCTTCTTTATCGTTGCTGCAGTTTGGTTTGTGATATTTGGACTATGCTTGTCCT TTATCTGCCTCTGCTATTGCTGTTGTAGAAGAGAACCTTATGGCTATTCTCGAGCATGCTATGCTCTGTCTCTTATCTCCCTCATTTTCTTTACCATTGC TGCAATTGCAGGATGTGGTGTTCTGTATGCTGGTCAAGGGAAGTTTCACAACAGTACAACACGCACATTGGAGTATGTAGTTAATCAGGCAGATGTTACT GCTGAAAACCTCAGGAATGTGTCAGATTATCTTGCTGCGGCTAAGAATGCTGGTGTATTGTCAGTTTTTCTGCCAACCAGTGTCCGAAATGACATTGATA GCATTCAAACAAAAATCAACTCCTCTGGTGCTACTCTTTCCAGTACTACACAGAAGAATTCGGAAGGCATACAAGATGTTTTGGATACCATAAGATTGAT CCTGATTATCCTTGCTGCTGTAATGCTTGCTCTGGCATTTCTTGGATTTGTATTCTCCATTTTCGGGATGCAGTGTCTTGTTTACTTCCTGGTGATCCTT GGCTGGATTCTTGTCACGTGCACATTTGTTCTGTGTGGTGTATTCCTTCTCCTCCACAATGTGGTTGCCGATACTTGTATTTCTATGGATGAGTGGGTTC AGAACCCCACTGCCAAAACAGCTCTGGATGATATAATCCCTTGTGTGGACAACGCAACTGCTCAAGAAACCTTGAGGCAGACAAAGGAGACAACTTACCA ACTTGTCAACGTTGTTGATAACATCATCAACACTGTCTCCAACAAAAATATCCCACGCCAAGCAGGAGGTCTATATTACAATCAATCTGGTCCGCTAATG CCTGTACTTTGCAACCCATACAATTCTGATTATACAGATCGGCAATGCGCTGCTGGTGAAGTGGACTTAAGCAATGCTACCCAGGTGTGGAAGAAATATA CCTGTCAGGTATCATCTGGGATTTGTACTACGCCTGGTCGGCTTACTCCTAGCTTGTACAACCAGATGGAATCTGCAGTAAACCTAAGTTATGGGTTGAA TCGTTATGGTCCATTCTTGGTTAACCTGGAAGACTGCACTTTTGTGCGAGAAACATTCACCAAGATCAACCATTCTTATTGTCCCGGTTTGCGGCGATAC ACGCAATGGATATACGTTGGGCTAGTAATTGTATCTGCTGCTGTAATGCTGTCCCTGATCTTCTGGGTAATTTATGCAAGAGAGAGAAGGCATCGTGTAT ATACCAAGCAGTTCGTGCCTACCTCCTTGGAAGGCCCTGGCAAGGCATCATGA
AA sequence Show only first row Show all	>Potri.006G060600.1 pacid=42769702 polypeptide=Potri.006G060600.1.p locus=Potri.006G060600 ID=Potri.006G060600.1.v4.1 annot-version=v4.1 MSCNNRSNPPLFFLLAFVFLFFLFTSSTATPSSATSHSLSLSISDDVVGERENDGVLVSWKARRHLAEEGNTTSSLILAAKRTRRRDPLDNSKFYTSGYN ISNKHYWASVGLTAAPFFIVAAVWFVIFGLCLSFICLCYCCCRREPYGYSRACYALSLISLIFFTIAAIAGCGVLYAGQGKFHNSTTRTLEYVVNQADVT AENLRNVSDYLAAAKNAGVLSVFLPTSVRNDIDSIQTKINSSGATLSSTTQKNSEGIQDVLDTIRLILIILAAVMLALAFLGFVFSIFGMQCLVYFLVIL GWILVTCTFVLCGVFLLLHNVVADTCISMDEWVQNPTAKTALDDIIPCVDNATAQETLRQTKETTYQLVNVVDNIINTVSNKNIPRQAGGLYYNQSGPLM PVLCNPYNSDYTDRQCAAGEVDLSNATQVWKKYTCQVSSGICTTPGRLTPSLYNQMESAVNLSYGLNRYGPFLVNLEDCTFVRETFTKINHSYCPGLRRY TQWIYVGLVIVSAAVMLSLIFWVIYARERRHRVYTKQFVPTSLEGPGKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G12400			unknown protein		Potri.006G060600 [exp]	0	1
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	5.56	0.8334	Pt-SEC14.2
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.007G138300 [exp]	10.09	0.8059
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.004G163200 [exp]	14.28	0.7812
AT1G48300			unknown protein		Potri.002G187300 [exp]	16.97	0.7162
AT5G40470			RNI-like superfamily protein (...		Potri.017G069800 [exp]	18.97	0.7902
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	20.78	0.7744
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070200 [exp]	22.91	0.8033
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	23.66	0.7496
					Potri.019G009900 [exp]	25.92	0.7765
AT1G34470			Protein of unknown function (D...		Potri.009G047400 [exp]	29.69	0.7416

Compare expression of checked genes

Potri.006G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.