Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) AT5G11090 126 / 5e-36 serine-rich protein-related (.1) AT5G20370 66 / 1e-13 serine-rich protein-related (.1) AT1G67910 43 / 9e-06 unknown protein AT1G24577 42 / 2e-05 unknown protein AT3G13227 41 / 7e-05 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120400 [exp] 216 / 2e-71 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.018G023300 [exp] 136 / 5e-40 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G258600 [exp] 130 / 1e-37 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060700 [exp] 61 / 3e-12 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 57 / 1e-10 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.018G079200 [exp] 43 / 1e-05 AT1G67910 45 / 9e-08 unknown protein Potri.001G371400 [exp] 44 / 2e-05 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.002G250700 [exp] 41 / 9e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.008G186200 [exp] 40 / 0.0002 AT1G67910 85 / 4e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039998 [exp] 156 / 1e-47 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 154 / 8e-47 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10038100 [exp] 151 / 9e-46 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10006660 [exp] 151 / 1e-45 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10001946 [exp] 123 / 8e-35 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 121 / 3e-34 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10008811 [exp] 54 / 1e-09 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 47 / 1e-06 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 41 / 8e-05 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 40 / 8e-05 AT1G67910 48 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G060800.1 pacid=42770228 polypeptide=Potri.006G060800.1.p locus=Potri.006G060800 ID=Potri.006G060800.1.v4.1 annot-version=v4.1 ATGGCAGCCACAGCCACTGGATCTTCTAGAAGAACATCAAGCGGACCAGCTCTCCGCTCAGTCTCTCCTCCCGGCAGATTTCACCAGCACTTAACCAGAT CTCCGACGTCTTACGCCTCCTCCACGGCTTTTGCTTCTTCAAGCTCTAGTTTCACCTCTCGCTCATCAACTTTCTTCACCAGATCCGCCTCCCCCACACG TGTCAACATGTACGGACACACCTCACAGTCGTCTTCTCCATCCGTCCGTTTAAATGCTATATCTCCTAACCGTTCAATCTCTACCGTCAATCCCTCTCGG AGCCATCACCATCAGGTCGTTAAAAAACAGAGCACTCCTAAGCGTACCTGTATGTGCTCACCGACGACTCATCCAGGCTCCTTCCGTTGTAGTCTCCATA AAGGTGTAGGGTTCGGGGGCTCGCCTTCATCATCCAACTACTCTTCAAACAACAATCGGTTGAATGCGCGCAGATCTGCAATGACAAATTCGCTAGTGAG AATCGGCGGTGTCGAAGGTGATTTGGTGAGGAGAGCTCTTGCTTCTTTGATTCGGCCCTCTTCACACCAGCAACGGAGGCGTTCTGCTTTCCAGCCACGA CCAAGCCGACTCTCCGTGATGTCCAAATCTGAGGTTTAA
AA sequence Show only first row Show all	>Potri.006G060800.1 pacid=42770228 polypeptide=Potri.006G060800.1.p locus=Potri.006G060800 ID=Potri.006G060800.1.v4.1 annot-version=v4.1 MAATATGSSRRTSSGPALRSVSPPGRFHQHLTRSPTSYASSTAFASSSSSFTSRSSTFFTRSASPTRVNMYGHTSQSSSPSVRLNAISPNRSISTVNPSR SHHHQVVKKQSTPKRTCMCSPTTHPGSFRCSLHKGVGFGGSPSSSNYSSNNNRLNARRSAMTNSLVRIGGVEGDLVRRALASLIRPSSHQQRRRSAFQPR PSRLSVMSKSEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25280			serine-rich protein-related (....		Potri.006G060800 [exp]	0	1
AT2G02148			unknown protein		Potri.008G143700 [exp]	2.44	0.8082
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.001G420400 [exp]	3.16	0.7931
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	4.24	0.8178
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	5.47	0.7692
AT3G04470			Ankyrin repeat family protein ...		Potri.019G019700 [exp]	6.70	0.7703
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.018G129700 [exp]	9.53	0.7629
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.014G142600 [exp]	11.66	0.7393	MAX2.2
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	20.92	0.8016
AT3G15358			unknown protein		Potri.011G052900 [exp]	22.80	0.7356
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	24.16	0.7968

Compare expression of checked genes

Potri.006G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.