Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 633 / 0 Major facilitator superfamily protein (.1) AT4G34950 335 / 6e-108 Major facilitator superfamily protein (.1) AT5G14120 332 / 1e-106 Major facilitator superfamily protein (.1) AT3G01930 317 / 7e-101 Major facilitator superfamily protein (.1.2) AT2G16660 313 / 1e-99 Major facilitator superfamily protein (.1) AT5G50520 291 / 2e-91 Major facilitator superfamily protein (.1) AT5G50630 291 / 2e-91 Major facilitator superfamily protein (.1) AT2G28120 258 / 3e-78 Major facilitator superfamily protein (.1) AT2G39210 257 / 8e-78 Major facilitator superfamily protein (.1) AT1G74780 238 / 4e-71 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012300 [exp] 722 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 712 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 359 / 4e-117 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 342 / 1e-110 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 332 / 2e-106 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 331 / 5e-106 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 326 / 1e-104 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.017G064201 [exp] 324 / 2e-103 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.006G122400 [exp] 263 / 8e-80 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001678 [exp] 793 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 692 / 0 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 689 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 683 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 673 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10030111 [exp] 343 / 4e-115 AT1G80530 259 / 5e-83 Major facilitator superfamily protein (.1) Lus10025053 [exp] 336 / 2e-108 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 329 / 1e-105 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 325 / 8e-104 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 323 / 6e-103 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.006G060900.1 pacid=42769974 polypeptide=Potri.006G060900.1.p locus=Potri.006G060900 ID=Potri.006G060900.1.v4.1 annot-version=v4.1 ATGGTGAACCTGAAAGCTGGGACAAGGCCGCCATGGGTTGGACTTGGAGCAGCAGTTTGGGTGCAAATAGCATCAGGGAATGCTTACAATTTCCCTCTTT ATTCCCATTCTTTAAAATCTGTTCTGGGATTTAACCAGCACCAGCTTACCATGCTTGGTGTTGCTAATGATGTTGGTGAGAATGTTGGACTCATTCCTGG TATTGCTTGCAACAAGTTCCCTCCTTGGGTGATTCTCTTGATTGGTGCTCTTTCTTGCTTCTTTGGTTATGGTGTTCTTTGGCTTGCCCTTAGCAGTAAA GTACAATCCTTGCCTTATTGGCTGCTATGCCTTGCTCTCTGTGTTGCCACCAATAGTAGTGCTTGGTTGAGCACAGCTGTTCTTGTAACCAACATGAGAA ACTTTCCTCTTAGTAGAGGCACTGTTGCTGGTGTTCTTAAAGGTTACGGTGGAATCAGTGCTGCAGTATTTACTGAAATTTATAGTACTCTGCTCCGCAA TTCCTCATCTAAGCTTCTGATGTTTCTTGCACTTGGAATTCCTGTTCTGTGTTTCATAGTCATGTATTTTGTAAGAGCTTGTACCCCTGCATCAGGTGAA GACTCTTCAGAACACGCCCATTTTCTTTTCACTCAAGGAGCTCTTATTGTACTCGGCTTATATGTCCTAACAACCACCATATTGAATCACATATTTCATT TCAGTGCTCCGGTATCTAATACCATTCTTGTTATAATGGTTGTCCTTCTCATGGCTCCATTTGCAATACCCATAAAAATGACATTTCACCGCATGAGAGT CAGTAAACCAGAGATGCATCACCAGCCAGTTGAGACTCCAGACAGTGTGATACAAGAAGACAACGCAGACAAAACCGAACCACTGCTGAAATCATCTTCA TCAACAACAGCCCTTGGAAGTTTTCGGGAAAATGTTGAGGCATCTGAGGTGGCTATGCTTCTAGCTGAGGGTGAAGGGGCTGTGAAGAAGAAGCGGAGAC CCAAAAGAGGGGAGGATTTCAGATTTACTGAAGCCCTAATAAAGGCTGATTTCTGGCTTCTTTTCTTTGTGTACTTTGTGGGTGTTGGATCTGGGGTAAC GGTGCTAAATAATCTGGCCCAGATAGGAATTGCACAAGGCGTGCATGATACTACCATCTTGTTGTCGCTCTTCAGCTTTTGCAATTTTGTGGGGCGTCTT GGTGGGGGTATTGTGTCTGAACATTTTGTCAGATCAAAAACAATCCCTCGGACAATATGGATGACGTGCACTCAAGTAATGATGATCATAACGTACCTGT TGTTTGCTTCTGCAATTGATGGTATCCTTTACGCCGCAACAGCATTACTTGGGATCTGCTATGGAGTTCAGTTCTCGATAATGATACCGACTGTCTCTGA GCTTTTCGGCTTGAAGCATTTTGGTTTATTTTACAACTTCATGTCACTAGGAAATCCTCTCGGTGCGTTCCTTTTCTCAGGTCTCCTGGCGGGCTATGTA TATGATAACGAGGCAGCAAAGCAGCAGGTACCAAATTTGCTGTCCAATTCAAGCATCTCCTGCTTGGGTCCAAATTGCTTCAGGCTCACCTTCTTGGTTC TGGCTGGTGCCTGCGGTTTGGGCTCCATCTTGAGCATTATTCTAACTATGAGGATAAGGCCTGTCTATGAGATGCTTTATGCTGGGGGTTCTTTCAGGCT TCCTCAAACTTCAAATCACCAACCTGCTCGAAGTGGAATATGA
AA sequence Show only first row Show all	>Potri.006G060900.1 pacid=42769974 polypeptide=Potri.006G060900.1.p locus=Potri.006G060900 ID=Potri.006G060900.1.v4.1 annot-version=v4.1 MVNLKAGTRPPWVGLGAAVWVQIASGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDVGENVGLIPGIACNKFPPWVILLIGALSCFFGYGVLWLALSSK VQSLPYWLLCLALCVATNSSAWLSTAVLVTNMRNFPLSRGTVAGVLKGYGGISAAVFTEIYSTLLRNSSSKLLMFLALGIPVLCFIVMYFVRACTPASGE DSSEHAHFLFTQGALIVLGLYVLTTTILNHIFHFSAPVSNTILVIMVVLLMAPFAIPIKMTFHRMRVSKPEMHHQPVETPDSVIQEDNADKTEPLLKSSS STTALGSFRENVEASEVAMLLAEGEGAVKKKRRPKRGEDFRFTEALIKADFWLLFFVYFVGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRL GGGIVSEHFVRSKTIPRTIWMTCTQVMMIITYLLFASAIDGILYAATALLGICYGVQFSIMIPTVSELFGLKHFGLFYNFMSLGNPLGAFLFSGLLAGYV YDNEAAKQQVPNLLSNSSISCLGPNCFRLTFLVLAGACGLGSILSIILTMRIRPVYEMLYAGGSFRLPQTSNHQPARSGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80530			Major facilitator superfamily ...		Potri.006G060900 [exp]	0	1
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Potri.001G109000 [exp]	8.48	0.9672
AT5G05800			unknown protein		Potri.007G118701 [exp]	16.88	0.9649
					Potri.017G115002 [exp]	21.42	0.9090
					Potri.006G128300 [exp]	21.90	0.9640
					Potri.013G071200 [exp]	22.71	0.9634
AT5G05800			unknown protein		Potri.001G339400 [exp]	26.85	0.9632
AT1G14930			Polyketide cyclase/dehydrase a...		Potri.008G131300 [exp]	27.65	0.9618
					Potri.003G131550 [exp]	33.09	0.9564
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.001G255950 [exp]	33.94	0.9557
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.003G081066 [exp]	38.32	0.9574

Compare expression of checked genes

Potri.006G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.