Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 285 / 6e-82 AtRLP15 receptor like protein 15 (.1) AT1G58190 286 / 7e-82 AtRLP9 receptor like protein 9 (.1.2) AT3G53240 277 / 3e-79 AtRLP45 receptor like protein 45 (.1) AT2G25470 277 / 4e-79 AtRLP21 receptor like protein 21 (.1) AT5G49290 266 / 1e-75 ATRLP56 receptor like protein 56 (.1) AT1G07390 268 / 2e-75 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 248 / 8e-69 AtRLP14 receptor like protein 14 (.1) AT1G74170 245 / 1e-67 AtRLP13 receptor like protein 13 (.1) AT1G54470 229 / 3e-62 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT3G11010 213 / 2e-57 AtRLP34 receptor like protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061300 [exp] 1045 / 0 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.006G061201 [exp] 662 / 0 AT2G25470 184 / 2e-51 receptor like protein 21 (.1) Potri.001G063909 [exp] 660 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.018G145512 [exp] 657 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G065327 [exp] 657 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G145516 [exp] 656 / 0 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.001G064900 [exp] 652 / 0 AT1G07390 290 / 7e-83 receptor like protein 1 (.1.2.3) Potri.018G144300 [exp] 650 / 0 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.001G063300 [exp] 645 / 0 AT1G07390 330 / 1e-96 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 421 / 1e-131 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 360 / 6e-109 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 330 / 1e-98 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10006948 [exp] 223 / 4e-61 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 223 / 2e-60 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 213 / 5e-57 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 211 / 3e-56 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 205 / 2e-54 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10039529 [exp] 203 / 1e-53 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 203 / 2e-53 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G061000.3 pacid=42767312 polypeptide=Potri.006G061000.3.p locus=Potri.006G061000 ID=Potri.006G061000.3.v4.1 annot-version=v4.1 ATGGATAAAGCAAGGGTTAAGTGGGTTCAATACGAAGAGAGAAGTGCTCTCTTGCGGATTAAAAGCTCCTTTAATTACCCAAGCGGCACATTCCTTCAAT CTTGGGGAAAAGTAGCCGACTGTTGTACTTGGGAAGGCGTTGACTGCAATTTCACTACAGGACGAGTTGTCGAACTTCATCTTTCAAGCATAAGGGAAGA GGGATTGGGAGATTTGTACCTAAATGTCTCTTTGTTTCGTCCCTTCCAAGAACTGCAGTCTCTTGGTTTAAGTGGAAATTTTATAGTTGGCTGTGTTGAG AATGAAGGTTTTGAAAGACTATCAGGACTTGACAGCTTGGTGGATCTCTATTTAGGCGAAAACAAATTCGACAACAGCATCCTTTCATCCCTTGGTGGGC TTTCCTCTTTGAGAACCCTGTATCTAGATGGTAACCAACTCAAAGGAGCAATTAGTGTTGATGAACTGAATAATCTAACAAGCTTGCGGTGGTTGGAGTT TGGTGACAATGAAATTGAAAGCTTTAAATCCATTCATGGTACTGGTGACGAATTACTGAGGTTAAGAAATCTGGAATCCCTTGGTTTGAATGGTAATCGC TTCAATGACAGTGCCTTATCATCCCTCAAGGGTCTTTCATCTCTCAAATCCCTGGATATAGCGTACAACCAACTGAAAGGATCATTCAATGTGACTGAGC TGGATGCTTTGATCAACTTAGAGAGACTGGATCTAGAGGGAAACGAGATTGACAAATTTGTGTTATCCAAAGATACTAGAGGTTTTGGAAATGTAAGCTT CATTTCATTATCTCAGAGCACCTCAAATGGAAGAGCTCTTCCATTTACATTGCTGCAATCGTTGACGAAATTCCCAAACCTCAGGACCCTTTATTTGGAT GAGAATAATCTTGAAGGAAGTTTCGGAACAACATTAGATAAAGACTTGGCTTCTCTCAAGAATTTAGAAGAGTTGGATTTGAGTTTCTCCACTGTCGATA ATAGCTTTCTGCAAATAGTCGGGAAGATTACTACTCTAAACAGTTTACGCTTGAATGGCTGTCGACTCAAGGGCTCCATCCCTAAAGCCCAAGGCCTATG TCAGTTAAAGCATCTCCAAAATCTAGAAATCAGTGGGAATGATCTCAGTGGTGCTTTGCCTTGGTGTTTGGCAAATTTGACATCCCTTCAACAATTACAT ATGTCTTCCAATAACTTTATTGGAGACATTTCCTTCTCTCCTCTTACAAGTCTCACATCCATCCGAGAGTTATCACTTTCAGACAACCACTTTCAGATCC CCGTCTCATTGAGCTCATTTCTCAACCATTCACAACTCAAGTATTTCGATGGTAGCAATAACGAAATATATGTTGAAGAATTAGAGGAGCATAATTTGGC CCCAAAGTTCCAATTAGAGTGTATTCGTTTATCTGGCAATGGATATGGTGGAGCATTTTCCTTTCCCAAATTCCTCCTCCATCAATACAGCCTCCAAATA ATTGATTTTTCTAACCTGAAAATGAGGGGAGGGTTTCCTATTTGGTTGTTAGAGAACAACACAAACCTAAATGAACTCCATTTGGTCAACAATTCTCTTT CAGGGACTTTTCAATTGCCAATTCATCCTCATCAGACTTTGTCTGAATTAGATATTTCTAACAATAACTTCGAAAGCCACATTCCTAGAGAAATAGGATC ATATTTTCCAAGTTTAACATTTTTATCCATGTCTGATAACCACTTCAGTGGTCGCGTTCCCTCTTCATTTGACTTTCTGTTGTCTCTTCAAGTTTTGGAC CTCTCAAATAACAACATCTCTGGAACCTTACCATCTTTGTTTAACTCTTCAGACATCCTGCATGTTTATCTGTCACGAAATATGCTACAAGGATCCCTAG AACATGCATTTCAGAAATCCTTTGATCTAATAACGTTGGATCTTAGCCATAATCATTTGACTGGTAGCATTCCAAAATGGATTGGTGAGTCTTCCCAACT GAGCTTTCTTCTCTTGGGTTATAATAATCTTGATGGCAGTATACCCACGCAATTGTGCAAGTTGAACAAATTAAGCTTCATTGATCTTTCTCATAATAAT TTTTCTGGTCATATTCTACCGTGCCTAAGATTTAAAAGCATTATTCGGTTCATCCTCCGCGGAGGATATCCTTCTGAGTTTAATCTTCGAGAACCATTGG TTATTGCAACAAAGAGCCTGTCCTATCCTTATCCGCCAAGTATTTTGTACTTCATGACCGGAATGGATCTCTCCTGCAACAGTTTGTCAGGTGCGATTCC TCCTGAAATTGGGAATCTCAACCACATTCATGTATTGAACCTGTCCAACAATCATTTAATAGGCCCAATCCCACAAACTCTTTCAAATTTGAGTGAAGTT GAGAGCTTGGACCTTTCCAATAACAGCTTGAATGGGGAAATCCCACCTCAACTTGTACAATTGCATTCTCTTGCCTATTTTAGTGTAGCCAACAATAACC TGTCTGGTAAGACTCCTGAGATGGTTGCACAATTCTCAACATTCAGTAAGAGCAGCTACGAGGGAAATCCCTTACTTTGTGGACCACCACTGCTTAACAG TTGCACCAAAGAAGTACCACCACCACCACCACCTGGGCCTTCTACTGATGAGAAAGAAGAGAGTAGCGTCATCATTGATGCACAAGTTTTCTGTGTGAGC TTTGTTGTGACGTACATCATGGTGCTGTTTGGAATAGCTGCAGTTTTGTACATAAACCCAGACTGGCGGCGAGCATGGTTTTATTTCATTGAGAAGAGCA TCAACACTTGCTACTACTTTGTTGCGGACAATCTTCTTAAGCCATTCAGAATCAGAGTTTGGAAGCCTTTGGTATAA
AA sequence Show only first row Show all	>Potri.006G061000.3 pacid=42767312 polypeptide=Potri.006G061000.3.p locus=Potri.006G061000 ID=Potri.006G061000.3.v4.1 annot-version=v4.1 MDKARVKWVQYEERSALLRIKSSFNYPSGTFLQSWGKVADCCTWEGVDCNFTTGRVVELHLSSIREEGLGDLYLNVSLFRPFQELQSLGLSGNFIVGCVE NEGFERLSGLDSLVDLYLGENKFDNSILSSLGGLSSLRTLYLDGNQLKGAISVDELNNLTSLRWLEFGDNEIESFKSIHGTGDELLRLRNLESLGLNGNR FNDSALSSLKGLSSLKSLDIAYNQLKGSFNVTELDALINLERLDLEGNEIDKFVLSKDTRGFGNVSFISLSQSTSNGRALPFTLLQSLTKFPNLRTLYLD ENNLEGSFGTTLDKDLASLKNLEELDLSFSTVDNSFLQIVGKITTLNSLRLNGCRLKGSIPKAQGLCQLKHLQNLEISGNDLSGALPWCLANLTSLQQLH MSSNNFIGDISFSPLTSLTSIRELSLSDNHFQIPVSLSSFLNHSQLKYFDGSNNEIYVEELEEHNLAPKFQLECIRLSGNGYGGAFSFPKFLLHQYSLQI IDFSNLKMRGGFPIWLLENNTNLNELHLVNNSLSGTFQLPIHPHQTLSELDISNNNFESHIPREIGSYFPSLTFLSMSDNHFSGRVPSSFDFLLSLQVLD LSNNNISGTLPSLFNSSDILHVYLSRNMLQGSLEHAFQKSFDLITLDLSHNHLTGSIPKWIGESSQLSFLLLGYNNLDGSIPTQLCKLNKLSFIDLSHNN FSGHILPCLRFKSIIRFILRGGYPSEFNLREPLVIATKSLSYPYPPSILYFMTGMDLSCNSLSGAIPPEIGNLNHIHVLNLSNNHLIGPIPQTLSNLSEV ESLDLSNNSLNGEIPPQLVQLHSLAYFSVANNNLSGKTPEMVAQFSTFSKSSYEGNPLLCGPPLLNSCTKEVPPPPPPGPSTDEKEESSVIIDAQVFCVS FVVTYIMVLFGIAAVLYINPDWRRAWFYFIEKSINTCYYFVADNLLKPFRIRVWKPLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	0	1
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	1.00	0.9268
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	2.82	0.8545
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	4.24	0.8084
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	5.09	0.8723
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	5.19	0.8578
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027400 [exp]	5.65	0.8110
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	6.63	0.7613
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	6.92	0.7696
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	7.07	0.8366
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	7.74	0.8302

Compare expression of checked genes

Potri.006G061000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.