Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25470 184 / 2e-51 AtRLP21 receptor like protein 21 (.1) AT1G74170 177 / 7e-49 AtRLP13 receptor like protein 13 (.1) AT1G58190 177 / 1e-48 AtRLP9 receptor like protein 9 (.1.2) AT1G74190 172 / 2e-47 AtRLP15 receptor like protein 15 (.1) AT3G53240 172 / 3e-47 AtRLP45 receptor like protein 45 (.1) AT5G49290 171 / 8e-47 ATRLP56 receptor like protein 56 (.1) AT1G74180 168 / 7e-46 AtRLP14 receptor like protein 14 (.1) AT1G07390 162 / 8e-44 AtRLP1 receptor like protein 1 (.1.2.3) AT1G54470 160 / 4e-43 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G47890 138 / 2e-35 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061000 [exp] 636 / 0 AT1G74190 286 / 4e-82 receptor like protein 15 (.1) Potri.006G061300 [exp] 469 / 3e-158 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.018G117927 [exp] 343 / 1e-108 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.018G117900 [exp] 327 / 1e-108 AT1G07390 244 / 7e-72 receptor like protein 1 (.1.2.3) Potri.003G041400 [exp] 340 / 2e-108 AT1G74190 334 / 1e-99 receptor like protein 15 (.1) Potri.001G064600 [exp] 337 / 4e-108 AT1G74180 347 / 5e-105 receptor like protein 14 (.1) Potri.018G120700 [exp] 338 / 2e-107 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 338 / 3e-107 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G118062 [exp] 333 / 3e-104 AT1G74190 421 / 1e-129 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 282 / 3e-87 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 223 / 5e-65 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 222 / 7e-65 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10039512 [exp] 166 / 6e-45 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10006948 [exp] 165 / 1e-44 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016325 [exp] 156 / 8e-44 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 155 / 2e-41 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10016384 [exp] 155 / 4e-41 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 139 / 9e-36 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 139 / 9e-36 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G061201.1 pacid=42770528 polypeptide=Potri.006G061201.1.p locus=Potri.006G061201 ID=Potri.006G061201.1.v4.1 annot-version=v4.1 ATGTCTGATAACCACTTCAGTGGTCGCGTTCCCTCTTCATTTGACTTTCTGTTGTATCTTCAAGTTTTTGACCTCTCAAATAACAACATCTCTGGAACCT TACCATCTTTCTTTAACTCTTCAAACCTCCTGCATGTTTATCTGTCACGAAATATGCTACAAGGATCCCTAGAACATGCATTTCAGAAATCCTTTGAGCT AATAACGTTGGATCTTAGCCATAATCATTTGACTGGTAGCATTCCAAAATGGATTGGTGAGTTTTCCCAACTGAGCTTTCTTCTCTTGGGTTATAATAAT CTTTATGGCAGTATACCCACGCAATTGTGCAAGTTGAACGAATTAAGCTTCATTGATCTTTCTCATAATAATTTTTCTGGTCATATTCTACCTTGCCTAA GATTTAAAAGCAGTATTTGGTTCATCCTCCTCGAAGAATATCCTTCTGAGTATTCTCTTCGAGAACCATTGGTTATTGCATCAAAGAGTGTGTCTTATTC TTATTCGCCAAGTATTTTGTACTACATGACCGGATTGGATCTCTCCTGCAACAGTTTGTCAGGTGCGATTCCTCCTGAAATTGGAAATCTAAACCACATT CATGTATTGAACCTGTCCAACAATCATTTAATAGGCCCAATCCCACAAACTCTTTCAAATTTGAGTGAAGTTGAGAGCTTGGACCTTTCCAATAACAGCT TGAATGGGGAAATCCCACCTCAACTTGTACAATTGCATTCTCTTGCCTATTTTAGTGTAGCCAACAATAACCTGTCTGGTAAGACTCCTGAGATGGTTGC ACAATTCTCAACATTCAGTAAGAGCAGCTACGAGGGAAATCCCTTACTTTGTGGACCACCACTGCTTAACAGTTGCACCAAAGAAGTACCACCACCACCA CCACCTGGGCCTTCTACTGATGAGAAAGAAGAGAGTAGCGTCATCATTGATGCACAAGTTTTCTGTGTGAGCTTTGTTGTGACGTACATCATGGTGCTGT TGGGAATAGCTGCAGTTTTGTACATGAACCCAGACTGGCGGCGAGCATGGTTTAATTTCATTGAGAAGAGCATCAACACTTGCTACTACTTTGTTGTGGA CAATCTTCTTAAGCCATTCAGAATCAGAGTTCGGAAGCCTTTGGTATAA
AA sequence Show only first row Show all	>Potri.006G061201.1 pacid=42770528 polypeptide=Potri.006G061201.1.p locus=Potri.006G061201 ID=Potri.006G061201.1.v4.1 annot-version=v4.1 MSDNHFSGRVPSSFDFLLYLQVFDLSNNNISGTLPSFFNSSNLLHVYLSRNMLQGSLEHAFQKSFELITLDLSHNHLTGSIPKWIGEFSQLSFLLLGYNN LYGSIPTQLCKLNELSFIDLSHNNFSGHILPCLRFKSSIWFILLEEYPSEYSLREPLVIASKSVSYSYSPSILYYMTGLDLSCNSLSGAIPPEIGNLNHI HVLNLSNNHLIGPIPQTLSNLSEVESLDLSNNSLNGEIPPQLVQLHSLAYFSVANNNLSGKTPEMVAQFSTFSKSSYEGNPLLCGPPLLNSCTKEVPPPP PPGPSTDEKEESSVIIDAQVFCVSFVVTYIMVLLGIAAVLYMNPDWRRAWFNFIEKSINTCYYFVVDNLLKPFRIRVRKPLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.006G061201 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	1.00	0.9268
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024800 [exp]	9.94	0.7897
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	11.48	0.8215
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	12.00	0.7580
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	12.24	0.8098
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	12.64	0.7472
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	19.67	0.7307	NFR1.1
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	20.49	0.8004
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027700 [exp]	28.56	0.7171
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	32.63	0.7783

Compare expression of checked genes

Potri.006G061201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.