Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12462 180 / 3e-56 unknown protein AT1G15760 123 / 2e-34 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G80520 119 / 3e-33 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012100 [exp] 141 / 1e-41 AT1G15760 204 / 3e-67 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.001G204600 [exp] 136 / 7e-40 AT1G15760 202 / 2e-66 Sterile alpha motif (SAM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001679 [exp] 186 / 3e-58 AT2G12462 136 / 5e-39 unknown protein Lus10041687 [exp] 118 / 3e-32 AT1G15760 158 / 1e-48 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10024059 [exp] 114 / 1e-30 AT1G80520 151 / 5e-46 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G061400.2 pacid=42769808 polypeptide=Potri.006G061400.2.p locus=Potri.006G061400 ID=Potri.006G061400.2.v4.1 annot-version=v4.1 ATGGACTGGTTCTCTTGGCTGTCAAAAAGCAGCCTCGAGCCCTCACTAATCTATGAGTATGGTCTTGCCTTTGCTCGTAATGAGCTCCAAGCAGAGGACT TGACGTACTTGAACCATGAGTTTCTTCAAAGTATGGGTATTTCAGTAGCCAAGCATAGGCTAGAAATACTCAAGCTTGCCAGGAAGGATGTTGGGGGAGG TCCACATAGCCTCTCTAAGTTCATTATGGCAATCAACAAGACCAAGAAGAGCATCCAGAAGTGTATCAATAAGTTGGTTTTTCATCGGGATTCTGCAGCA TTTAAGGCTGAACTAGAGCCAGAGCTAGCTAGATATCAAGGACAGTGGAAAAGAGGAGCATTGACAAGGAAGTACAGGAGTGAGAAGGAGTTGATCAAAG TAGAGCAGCCTCCAATACTCAAAATCAGGAGACAAGCAAAATCTGGTCCTTTGGATACTAGGATGCAAGAGAATTTGATGCATGCCAATAGATGCTTGAA GTTGTCTGGGCCTCTGGATGGGAAAGTGCAGGAGAGATTGGTGTTTGCTTACAGGAGCCCAAAATTATATGGGACTTCAGATGGAAGGGTGCCACAAAGT TTGATGATGACTAATAGGAGCCCACAAGTACGTAGCCCCTTGGATGCAAGATCTACAAGCCCAAAAATTCATTGTGATTACAGCAAGGAAAGAAGAGGAC TCAACGGTGATTTTGACGATCAGTCACTTTGGTCTGCACTTTTTCAAGACATGAAACCCACTTAA
AA sequence Show only first row Show all	>Potri.006G061400.2 pacid=42769808 polypeptide=Potri.006G061400.2.p locus=Potri.006G061400 ID=Potri.006G061400.2.v4.1 annot-version=v4.1 MDWFSWLSKSSLEPSLIYEYGLAFARNELQAEDLTYLNHEFLQSMGISVAKHRLEILKLARKDVGGGPHSLSKFIMAINKTKKSIQKCINKLVFHRDSAA FKAELEPELARYQGQWKRGALTRKYRSEKELIKVEQPPILKIRRQAKSGPLDTRMQENLMHANRCLKLSGPLDGKVQERLVFAYRSPKLYGTSDGRVPQS LMMTNRSPQVRSPLDARSTSPKIHCDYSKERRGLNGDFDDQSLWSALFQDMKPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G12462			unknown protein		Potri.006G061400 [exp]	0	1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G088800 [exp]	3.46	0.9860
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	6.48	0.9827
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	9.00	0.9854
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	11.48	0.9848
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	12.40	0.9792
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	14.28	0.9830
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.016G051100 [exp]	16.27	0.9712
AT3G28040			Leucine-rich receptor-like pro...		Potri.014G147300 [exp]	23.10	0.9678
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067500 [exp]	23.49	0.9750	Pt-CIPK20.1
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	24.18	0.9719

Compare expression of checked genes

Potri.006G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.