Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12550 576 / 0 NUB1 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118143 [exp] 908 / 0 AT2G12550 572 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008818 [exp] 640 / 0 AT2G12550 616 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10039971 [exp] 523 / 0 AT2G12550 563 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Potri.006G061500.5 pacid=42767357 polypeptide=Potri.006G061500.5.p locus=Potri.006G061500 ID=Potri.006G061500.5.v4.1 annot-version=v4.1 ATGTCTTCTCCTTCAATGGCAAAACTGAAGGTAGCAGGAACATGGGCTGGAGTTTTAGAGGTAGAACCAGAGAATTGGACAGTGCTCATGTTGAGAGAGG AGATTGCAAAGAGATCAAACATGGGCACTGAGTCGATCAATCTAATTTTTGCTGGCAAAGTCTTGAAAGACTGTACCAGTGAGGAAAAAAACAGTCTTTC TCAATTGGGTATTAAAAATAACTCTAAAATTCTTGCTTGTCGTGTCTCTGTGGAAGAGGGTAAAACTTTAAAGAATGAGTTGTTGGCTGATGATGAAAGA AACCGTAGACTTGCTCGTATCAAGGCAGCAGTCACTGCATTGTCCAAGAGACATGCAGATGGTGCATTACCAATAGAAGACTTCGATATCGAACTCGAAG ATCAGAGTGGGAAGAAAGTGCACTTTTCTGAGACCGATAGACAGGCAATAATGACAGGTCTGATGCTTCATACAAGCGGAAAGCGGTTTATCAGAAAGCA AATGTTTAGTGATGCACTTGAAGTTCTTACTATGGGAGAGGAGGCTTTCTCTCTATGCAATCCCAAGTCTATTGAACTTGTCGACAATATCCCAATACTG CAAATAGACATGGTGTGGTGTTACTTCATGCTCCAAGATATTGCCTGGCTCTCAGTGGCAGGATTACGCCTCGAAAAGGCTAGAGAAGGACTTGAACGTG CTCACGGAAAGGACTCCTCCCGATTCAGACTGCTTCAAGCTGGTTGTTCTTCAGAGCTCGCATTATATTTGCGATTGGAATTGTTGGAAGGAGTGGTGGC ATATCACAGTGGCCAATTTGACAAGTCTAGGAAGTTCTTGACCTCTGCACAAGCAAAATTCTTCCAGCTACAAGTGCCAGATGAAGCCTTATCAGTTGTC ATGAGCATTGGATTTGGGGAACAAGATGCAAAAAGAGCATTGAGAATGAGCAATCAGGATGTTCAAAGTGCCGTTAATTTTCTTGTACTGGAAAGGGAAA AGAGAGAACAGAAACGGGAAGATGACATTCGTCGAAGAAATGAAATCAAGGAGCAGAAACGGTATGGAGTTACACCCTTAAAGAAAGCTGTGGATCTCCA GAAACTGACAGAGTTGGTCTCCATAGGATTTGAGAAGGAGCTTGCTGCTGAAGCTCTTCGAAAAAATGAGAATGGTTCTCAGGAGGCATTGGATGACTTG ACAAACCCAGAAGCTAATACTGAACTCCAGCGTGCTATAGAATCAAGAAAAAGGAAAAGACAGCAACGAGCCACTGATGCCACAGTTGAACAGCTTGTGT CCATGGGCTTTGAAAGATCTAGAGTGATTGGTGCTGTCCAAGCTGGTGGCTCTTTAGAGGAAGTCATGCATCAACTACTCACACATCCCCAAGCAGACAC CACAGCTGCGGCTGATGACAGCTCCAATGCTCATGATTCCTCTGGGAACAATAATGCAAGTACTGACTTAAATGCTAACGATAATGCTTGTGCTCCTGAT TCAACTCCTACCAACCCTGCTGTGGAGAATCTTAGTCCAGATACTTTGGGCATTGATAATAGTAATGAAGGTCCTTCAGCCGAACAGCGGGACTTGGAGA TGGAGGATGAAATTGCTGATGAACTCACAAGAGGCGATGCATTGTCAGATTATAACATTGATGTGACACAGGAAGGCGATGCCATAAATGAGTACCTCGC TTTGCTGGATTCAGGGGGTGGCAATGGAAAAGCTTCGTCTTCCCAGTTGTCCCACTAA
AA sequence Show only first row Show all	>Potri.006G061500.5 pacid=42767357 polypeptide=Potri.006G061500.5.p locus=Potri.006G061500 ID=Potri.006G061500.5.v4.1 annot-version=v4.1 MSSPSMAKLKVAGTWAGVLEVEPENWTVLMLREEIAKRSNMGTESINLIFAGKVLKDCTSEEKNSLSQLGIKNNSKILACRVSVEEGKTLKNELLADDER NRRLARIKAAVTALSKRHADGALPIEDFDIELEDQSGKKVHFSETDRQAIMTGLMLHTSGKRFIRKQMFSDALEVLTMGEEAFSLCNPKSIELVDNIPIL QIDMVWCYFMLQDIAWLSVAGLRLEKAREGLERAHGKDSSRFRLLQAGCSSELALYLRLELLEGVVAYHSGQFDKSRKFLTSAQAKFFQLQVPDEALSVV MSIGFGEQDAKRALRMSNQDVQSAVNFLVLEREKREQKREDDIRRRNEIKEQKRYGVTPLKKAVDLQKLTELVSIGFEKELAAEALRKNENGSQEALDDL TNPEANTELQRAIESRKRKRQQRATDATVEQLVSMGFERSRVIGAVQAGGSLEEVMHQLLTHPQADTTAAADDSSNAHDSSGNNNASTDLNANDNACAPD STPTNPAVENLSPDTLGIDNSNEGPSAEQRDLEMEDEIADELTRGDALSDYNIDVTQEGDAINEYLALLDSGGGNGKASSSQLSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	0	1
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	1.41	0.8941
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	2.82	0.8813
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.008G117700 [exp]	3.16	0.8552
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	6.48	0.8723
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	6.70	0.8680
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	6.92	0.8512
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	7.34	0.8388
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	7.48	0.8273
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	7.48	0.8606
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	9.16	0.8722

Compare expression of checked genes

Potri.006G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.