Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15740 612 / 0 Leucine-rich repeat family protein (.1) AT4G23840 101 / 3e-22 Leucine-rich repeat (LRR) family protein (.1) AT5G27920 56 / 7e-08 F-box family protein (.1) AT1G53730 52 / 9e-07 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT1G75640 49 / 1e-05 Leucine-rich receptor-like protein kinase family protein (.1) AT5G06820 49 / 1e-05 SRF2 STRUBBELIG-receptor family 2 (.1) AT4G39270 45 / 0.0002 Leucine-rich repeat protein kinase family protein (.1.2) AT3G44400 45 / 0.0002 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G14390 44 / 0.0003 Leucine-rich repeat protein kinase family protein (.1) AT3G58530 42 / 0.0007 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092000 [exp] 104 / 2e-23 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.005G011600 [exp] 64 / 2e-10 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G009700 [exp] 62 / 9e-10 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.003G028557 [exp] 61 / 1e-09 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 57 / 3e-08 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120700 [exp] 56 / 7e-08 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.019G123400 [exp] 51 / 2e-06 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.018G117927 [exp] 50 / 3e-06 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.003G041700 [exp] 50 / 5e-06 AT1G58190 247 / 4e-69 receptor like protein 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008036 [exp] 734 / 0 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10038107 [exp] 690 / 0 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10025751 [exp] 556 / 0 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10035912 [exp] 532 / 0 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10001831 [exp] 82 / 6e-16 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10039531 [exp] 52 / 9e-07 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10020030 [exp] 52 / 1e-06 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003886 [exp] 49 / 7e-06 AT4G23840 281 / 8e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10023272 [exp] 49 / 1e-05 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023988 [exp] 48 / 2e-05 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13306 [poplar] [flax] LRR_5 BspA type Leucine rich repeat region (6 copies) CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G061700.9 pacid=42767203 polypeptide=Potri.006G061700.9.p locus=Potri.006G061700 ID=Potri.006G061700.9.v4.1 annot-version=v4.1 ATGACATCAATAGATAACCAGCGAGATCACAAGTCAATGGGTGGAATTTGTTCAAGGAAGAGAGACCAGCAGGTTTTAGAGGGTAGAGTACGAAGAGGGG TTTCTGGAAACTATAGTAAAAGTTCAAGTTCAAAATGGCTGGGGACCACATTTGCTCGACCCAATGCTGATCTTCAGCCAGGATGCAGTTTCCCATCTCT CCTGGAATTATGCATCTACAGAATACGCGAGGACATCAGCAGATATAAATCATATTCTATGCTGCCAAGGGATTTAAGTCAGCAAATCTTTAATGAATTG GTAATCTCACATAGTCTTACAGCAGCTTCTCTTGAAGCTTTTAGAGACTGTGCTCTTCAGGATGTCCTTTTGGGTGAATATCCTGGAGTTATGGATAGTT GGATGGATGTCATCTCTTCACAAGGTTCATCTTTGCTTTCTGTTGACCTTTCTGATTCTGATGTCACAGATGCTGGGTTGGGTCTCCTCAAGGACTGTTC AAACCTCCAAGCAATTGCTCTAAATTATTGCAACAACATTTCTGACAATGGTCTGAAACACTTAAGTGGTCTTACAAATATTACATCCTTGAGTTTGAAA AAGAGCTGCTCTGTAACTGCTGAAGGAATGCGTGCCTTTTCTACCTTGCTCAACTTGGAAAATTTAGATATGGAGAGGTGTTCTGGGATTCATGGTGGAC TAGTTCATCTTAAAGGATTAAAAAAACTTGAGTCCCTTAATATCAGATGTTGTAAGTGCATCACAGATATGGACATGAAGGCTATATCAGGTCTTACTAA CTTGAAGGAGTTACAGATTTCTAATACTAACGTTACTGATGTTGGAGTTTCTTATTTAAGAGGCTTGCAGAAGCTTATTATGTTGAACTTGGAGGGGTGC AATATTACCACTGCATGTTTAGATTCCATTTCAGCTCTTGCAACCCTTGCCTACTTGAATTTAAACAGATGTCATCTACCTGATGATGGATGTGATAAGT TCTCTGGATTGAAAAACTTGAAGGTGTTGAGCTTGGCATTCAACGATGTAACAGATGCATGTTTGGTGCATCTAAAAGGCTTGAAAAATTTGGAGAGCTT GAACTTGGATTCTTGTAGGATTGGTGATGAAGGCATTGCTAATTTGGCAGGCCTTCCACTTAAAAGTTTGGAGTTGTCTGATACTATAGTTGGAAGCAGT GGGCTGCGGCATCTTTCTGGAATACCTCATCTGGAGAACTTAAATCTATCATTCACCTTAGTAACAGATGGTGGTTTAAGGAAGTTATCTGGACTGACAT CTCTTAGATCACTCAACTTGGATGCTCGCCAAATTACAGATGCTGGACTTACAGCTCTTACGAGTCTTACTGGATTGACACGTCTGGATCTTTTTGGCGC TCGCATTACAGATTCTGGAACAAACTGTTTGAAATACTTCAAAAATCTCAAATCACTTGAAATCTGTGGTGGAGGACTAACTGATGCTGGGGTGAAGAAT ATCAAAGATCTTGTACACCTGACAGTTCTGAACCTGTCACAGAATACGAATCTGACAGACAAGACCTTGGAGTTGATTTCTGGGTTGACAGAATTGGTAT CATTGAATGTTTCAAATTCTCTCATAACCAACGAAGGATTACGCTATTTGAAGCCTTTGAAGAATTTACGTGCATTAACTTTGGAATCCTGCAAGGTAAC TGCATCTGAAATCAAGAAGCTTCAGTCAACTGAACTCCCTAATCTGGCAAGTGTTCGGCCAGAATAG
AA sequence Show only first row Show all	>Potri.006G061700.9 pacid=42767203 polypeptide=Potri.006G061700.9.p locus=Potri.006G061700 ID=Potri.006G061700.9.v4.1 annot-version=v4.1 MTSIDNQRDHKSMGGICSRKRDQQVLEGRVRRGVSGNYSKSSSSKWLGTTFARPNADLQPGCSFPSLLELCIYRIREDISRYKSYSMLPRDLSQQIFNEL VISHSLTAASLEAFRDCALQDVLLGEYPGVMDSWMDVISSQGSSLLSVDLSDSDVTDAGLGLLKDCSNLQAIALNYCNNISDNGLKHLSGLTNITSLSLK KSCSVTAEGMRAFSTLLNLENLDMERCSGIHGGLVHLKGLKKLESLNIRCCKCITDMDMKAISGLTNLKELQISNTNVTDVGVSYLRGLQKLIMLNLEGC NITTACLDSISALATLAYLNLNRCHLPDDGCDKFSGLKNLKVLSLAFNDVTDACLVHLKGLKNLESLNLDSCRIGDEGIANLAGLPLKSLELSDTIVGSS GLRHLSGIPHLENLNLSFTLVTDGGLRKLSGLTSLRSLNLDARQITDAGLTALTSLTGLTRLDLFGARITDSGTNCLKYFKNLKSLEICGGGLTDAGVKN IKDLVHLTVLNLSQNTNLTDKTLELISGLTELVSLNVSNSLITNEGLRYLKPLKNLRALTLESCKVTASEIKKLQSTELPNLASVRPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	0	1
AT5G07080			HXXXD-type acyl-transferase fa...		Potri.019G126400 [exp]	3.46	0.7784
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	3.60	0.7555
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	4.89	0.7364
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	5.83	0.8064
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Potri.007G044400 [exp]	6.16	0.7430
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	7.34	0.8120
AT1G23890			NHL domain-containing protein ...		Potri.004G087300 [exp]	9.05	0.7095
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	9.38	0.7605
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	10.00	0.7619
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	10.95	0.7982

Compare expression of checked genes

Potri.006G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.