Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20350 960 / 0 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G14255 548 / 0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G24630 92 / 8e-20 DHHC-type zinc finger family protein (.1) AT3G26935 92 / 9e-20 DHHC-type zinc finger family protein (.1) AT5G41060 91 / 2e-19 DHHC-type zinc finger family protein (.1.2) AT5G50020 87 / 6e-18 DHHC-type zinc finger family protein (.1.2) AT3G48760 87 / 7e-18 DHHC-type zinc finger family protein (.1) AT5G05070 86 / 1e-17 DHHC-type zinc finger family protein (.1) AT3G56930 86 / 2e-17 DHHC-type zinc finger family protein (.1.2) AT2G03430 77 / 1e-15 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121200 [exp] 1210 / 0 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G287000 [exp] 614 / 0 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.007G077000 [exp] 100 / 1e-22 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 100 / 5e-22 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.012G103300 [exp] 96 / 7e-21 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 96 / 8e-21 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 95 / 3e-20 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.003G160600 [exp] 93 / 8e-20 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 93 / 9e-20 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008037 [exp] 959 / 0 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038108 [exp] 856 / 0 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012455 [exp] 534 / 0 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10020505 [exp] 361 / 5e-119 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10022451 [exp] 89 / 1e-18 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 89 / 2e-18 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 87 / 3e-18 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 88 / 4e-18 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10035177 [exp] 88 / 4e-18 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 87 / 5e-18 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.006G061800.3 pacid=42769714 polypeptide=Potri.006G061800.3.p locus=Potri.006G061800 ID=Potri.006G061800.3.v4.1 annot-version=v4.1 ATGCCATCAGAGATTGAGATAGTAGAGGAAGATGTGGTGGCCCAATCCAACGATCGAGAATCAGCAGCTGTTAATGGAGGCATTAGTAATAATGGGGTTG CTGTTGCTGGAGAAGACAGCTTGAGAAATGATGTTTACACAGCAGCTGCTTATGGAGATTTAGAGAAGCTTCAGAGATTGGTTGAGAGTGAAGGATGTTC TGTTTCTGTACCTGATAACCTTGGTTATTATGCTTTACAGTGGGCTGCTTTGAATAATCGCACGGCTGCTGCTCAGTATATTATCGAGCATGGAGGAGAT GTAAATGTGGTTGATCATACAGGCCAGACAGCATTGCATTGGACTGCAGTCCGGGGTGCAATTCAAGTTGCTGAGCTGTTGCTACAAGAGGGTGCGGGGG TAAATGCCGCCGATATGTATGGCTATCAGACAACTCATGTTGCAGCTCAATATGGTCAGACAGCTTTTCTCTATCACATTGTCTCAAAATGGAATGCTGA CCCCGATGTTCCTGACTTTGATGGAAGAAGCCCTTTACACTGGGCTGCTTATAAAGGTTTTGCTGATTCTATACGCCTTCTATTGTTTCTGGATTCTTAT AGAGGACGCCAAGATAGAGAGGGATGCACTCCTCTCCATTGGGCTGCTATTAGGGGTAACTTGGAGGCATGCACAGTGCTAGTACAGGCTGGAAAGAAAG AGGACTTGATGGTGACTGATAACACTGGCCTTACTCCAGCGCAGCTTGCTTCTGACAAAAATCATCGACAAGTTGCTTTTTTCCTAGGAAATGCTAGAAG GTTGCTTGACAAACAATGTGATGGGAACGACCGCCTGGGACGCCTCTCAAAGTTGGGGCTTGCACCTGTGTTGTGGTTCATAATTATACTTCTCCTGTTG ATCTATGTTAATTCTGTCATCCTGGCTTCAAATCTGCCAAAGTTAACAGCTGGCTTTGGCCTTCTTGCCTGGCTTGCTGTTTTCCTGGCTACTGGTGGAC TAGTTATGTTTTATAGATGTAGCAGGAAGGATCCAGGTTACATTAGAATGAATGTGCATGATCCACAGAATATGAAAGATGATGAGCCACTTTTGAAGAT TGAGATAAACAACCCTGCTTTGCTAGCTGGGAATTGGTCTCAGCTCTGTGCAACATGCAAGATTGTCAGACCTCTCCGTGCAAAGCACTGTTCCACATGT GATCGATGTGTTGAACAATTTGATCATCATTGCCCTTGGGTATCTAACTGTATTGGCAAGAAAAACAAATGGGAATTCTTTGCATTTCTTGTTCTAGAAG TTTCAGCAATGTTGATAACTGGTGCAGTGACTCTCACAAGAGTTCTGACTGATCCATTTGCTCCGTCTTCACTGGGAGCATGGGTAAACCATGCTGGCTC TCATCATATTGGTGCTATATCATTTTTGATTATGGACTTCTTCCTCTTCTTTGGCGTGGCAGTATTAACTGTTGTACAAGCTTCTCAGATATCTCGCAAT ATAACAACCAATGAAATGGCAAATGCACTGCGGTATAGCTACCTTAGGGGCCCAGGGGGCCGCTTCAGAAACCCATATGATCATGGCTGTAAAAAGAATT GCTCAGATTTCTTGATCAATGGTTACAATGAAGATGTGGATTATAATGAAGATTCTCCACATTCTGAGGGGATTGGAATGATGCACATGTCGAGGAATTC AAACTTGCAAAATGGGGATGCTCATTCTCATCACATGAATGGCAATGGCCATGTGGCTATCAATGTGAATTCAGAAAATAAAATCCCTCAGGGTCATGTC CATTCTTCCCATTGCAGCCATAATCACCAAGGGAAGCCAAGAACAGATAGCGCACCCTTGGGTTTGGGTGGTCTTGGTCTTGGAAAAAGCAGTGCCCGAA CAGTTGAAGCTTCATGA
AA sequence Show only first row Show all	>Potri.006G061800.3 pacid=42769714 polypeptide=Potri.006G061800.3.p locus=Potri.006G061800 ID=Potri.006G061800.3.v4.1 annot-version=v4.1 MPSEIEIVEEDVVAQSNDRESAAVNGGISNNGVAVAGEDSLRNDVYTAAAYGDLEKLQRLVESEGCSVSVPDNLGYYALQWAALNNRTAAAQYIIEHGGD VNVVDHTGQTALHWTAVRGAIQVAELLLQEGAGVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDFDGRSPLHWAAYKGFADSIRLLLFLDSY RGRQDREGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKQCDGNDRLGRLSKLGLAPVLWFIIILLLL IYVNSVILASNLPKLTAGFGLLAWLAVFLATGGLVMFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTC DRCVEQFDHHCPWVSNCIGKKNKWEFFAFLVLEVSAMLITGAVTLTRVLTDPFAPSSLGAWVNHAGSHHIGAISFLIMDFFLFFGVAVLTVVQASQISRN ITTNEMANALRYSYLRGPGGRFRNPYDHGCKKNCSDFLINGYNEDVDYNEDSPHSEGIGMMHMSRNSNLQNGDAHSHHMNGNGHVAINVNSENKIPQGHV HSSHCSHNHQGKPRTDSAPLGLGGLGLGKSSARTVEAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	0	1
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	2.64	0.7262
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	3.00	0.7971
AT2G43320			S-adenosyl-L-methionine-depend...		Potri.007G127300 [exp]	4.00	0.7723
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.007G057600 [exp]	6.48	0.6849	CPK16,Pt-CPK16.1
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	8.36	0.7319
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.001G337400 [exp]	12.00	0.6802	ACG12.1
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	12.24	0.7175
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	13.74	0.7177
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	14.28	0.7275	Pt-ACA1.1
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	14.86	0.7006

Compare expression of checked genes

Potri.006G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.