Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 729 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 518 / 7e-180 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 492 / 1e-169 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121500 [exp] 971 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 699 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 517 / 1e-179 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 495 / 6e-171 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038109 [exp] 765 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 763 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 746 / 0 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 563 / 0 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10015737 [exp] 499 / 2e-172 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 496 / 5e-171 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 490 / 6e-169 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 486 / 2e-167 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 485 / 3e-167 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 479 / 7e-165 AT5G07830 524 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03662 [poplar] [flax] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G062200.1 pacid=42768123 polypeptide=Potri.006G062200.1.p locus=Potri.006G062200 ID=Potri.006G062200.1.v4.1 annot-version=v4.1 ATGAGTTCTTTGCAGAACCGGGAAATGGGGTTGTGCTTACTGGTGTGCATCATTAGCTGCAGCTTCATTTATGTGAGTTCACAAAGTGCTGTGGCTGGAA ACGATAATAGCAGTGTTAGTGAAGGAACTGTTTTCATTGATGGAAAGACTTCCATTGGAAAGATTGATGAAGATTTCATTTGTGCCACCTTGGATTGGTG GCCACCTGAGAAATGTGATTATGGGACATGCAGCTGGGACCAGGCTTCTCTCATTAATCTGGATCTCAACAACAACATCTTGTTAAATGCCATAAAGGCT TTTTCACCATTGAAAATCAGATTAGGAGGCACTTTGCAAGATAAGGTCATTTACGACACTGAAGATAATAAGCAACCTTGTGTTCAATTTGTTAAAAACA CCAGTGAGATGTTTGGTTTCACTCAAGGTTGCTTGCCCATGTATAGATGGGATGAGCTAAATGCCTTTTTCAAGAAATCTGGGGCTGAAATTATATTTGG GTTAAATGCTCTCGCTGGCCGGTCCATAACATCTGATGGTTCTGCAGTAGGAGCTTGGAACTACACCAATGCAGAATCGTTTATAAGCTATACTGTCAAA AAGAACTACTCTATTTATGGCTGGGAGCTCGGAAATGAATTGAGTGGAAGTGGTGTTGGAACAAGAGTTGCAGCAGCTCAGTATGCTTCTGATACAATTT CCCTGTATAACACAGTGAAAAAGATATACAGCAGTATTGAACCGAAACCACTAGTTATAGCACCTGGAGGATTCTTTGATGCAAATTGGTTCAAAGAGTT TGTAGATAAAACAGGCAATTCTGTAAATGCGATCACCCACCACATATACAATCTTGGTCCAGGGGTTGATACACATCTCATCGAAAAGATCCTTGATCCA TCCTATCTTGATGGTGAGGCTGATACATTCAATAGCCTCCAAAGCACCATAAAGAGTTCTGCAACTTCAGCAGTTGCATGGGTTGGTGAATCAGGTGGGG CTTACAACAGTGGCCGTAACCTTGTTACCAATGCGTTCGTGTTTAGTTTCTGGTACTTGGATCAGCTTGGGATGGCATCAGCTTATGATACAAAAACATA CTGCAGACAGTCATTGATTGGTGGCAATTATGGTCTACTCAACACTACTACTTTTGTTCCAAATCCGGATTACTACAGTGCTCTTCTTTGGCACCGATTA ATGGGAAGAAACGTTCTATCAACCAGCTTTTCTGGAACAAAAAAGATACGTGCTTATACTCATTGCGCGAAACAATCCAAAGGGATCACATTACTACTAA TCAACCTTGACAATAGCACAACTGTTGAAGTCACTGTAACATTCAACAGTACTCGGAGATTGCACCAGAAACACAAGCCTCACAGGTCTCACAAGCTCCA CAAACCTCACAGGTCTCATAGGTCTCATAAGTCCCATAAATCAAAGGTCATTCAGCAACCTCAACGGTCCACAAGTGGGATAACAAGAGAGGAATACCAT CTAACAGCTAAAGATGGAGATTTACACAGCCAAACAATGCTACTTAATGGGAACATTTTAACTGTAAATTCATCTGGGGACATCCCTTCCTTGGAGCCTT TACATGTAAATTCGTCCAAGCCAATAATGGTTGCTCCTTTCTCTATTGTATTCGTTCAAATGCCATATGTTCTCCCTGCTTGCAGCTAG
AA sequence Show only first row Show all	>Potri.006G062200.1 pacid=42768123 polypeptide=Potri.006G062200.1.p locus=Potri.006G062200 ID=Potri.006G062200.1.v4.1 annot-version=v4.1 MSSLQNREMGLCLLVCIISCSFIYVSSQSAVAGNDNSSVSEGTVFIDGKTSIGKIDEDFICATLDWWPPEKCDYGTCSWDQASLINLDLNNNILLNAIKA FSPLKIRLGGTLQDKVIYDTEDNKQPCVQFVKNTSEMFGFTQGCLPMYRWDELNAFFKKSGAEIIFGLNALAGRSITSDGSAVGAWNYTNAESFISYTVK KNYSIYGWELGNELSGSGVGTRVAAAQYASDTISLYNTVKKIYSSIEPKPLVIAPGGFFDANWFKEFVDKTGNSVNAITHHIYNLGPGVDTHLIEKILDP SYLDGEADTFNSLQSTIKSSATSAVAWVGESGGAYNSGRNLVTNAFVFSFWYLDQLGMASAYDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRL MGRNVLSTSFSGTKKIRAYTHCAKQSKGITLLLINLDNSTTVEVTVTFNSTRRLHQKHKPHRSHKLHKPHRSHRSHKSHKSKVIQQPQRSTSGITREEYH LTAKDGDLHSQTMLLNGNILTVNSSGDIPSLEPLHVNSSKPIMVAPFSIVFVQMPYVLPACS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.006G062200 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	1.41	0.9177
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.011G153300 [exp]	2.00	0.9071
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	6.92	0.8715
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	8.77	0.8783
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	9.16	0.8898
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	10.24	0.8938
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	11.31	0.8924
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G096900 [exp]	12.00	0.8821	LAC1c,Pt-LAC2.3
AT3G60380			unknown protein		Potri.014G045300 [exp]	12.36	0.8695
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	13.07	0.8325

Compare expression of checked genes

Potri.006G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.