Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20380 636 / 0 PHT4;5 phosphate transporter 4;5 (.1) AT2G29650 286 / 3e-90 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 280 / 2e-87 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G38060 186 / 3e-52 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 166 / 9e-45 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT5G44370 161 / 6e-44 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121600 [exp] 867 / 0 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.001G249800 [exp] 295 / 1e-93 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 294 / 1e-92 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 292 / 2e-92 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.016G111000 [exp] 181 / 2e-50 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G248200 [exp] 164 / 2e-44 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G168200 [exp] 142 / 5e-37 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 52 / 1e-07 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038110 [exp] 619 / 0 AT5G20380 662 / 0.0 phosphate transporter 4;5 (.1) Lus10008039 [exp] 398 / 2e-136 AT5G20380 437 / 2e-152 phosphate transporter 4;5 (.1) Lus10018218 [exp] 297 / 3e-94 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 297 / 2e-91 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10008040 [exp] 279 / 7e-91 AT5G20380 260 / 4e-84 phosphate transporter 4;5 (.1) Lus10036366 [exp] 275 / 4e-85 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 196 / 1e-53 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10040703 [exp] 183 / 6e-51 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10035532 [exp] 178 / 3e-49 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10018203 [exp] 181 / 1e-48 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.006G062300.2 pacid=42770622 polypeptide=Potri.006G062300.2.p locus=Potri.006G062300 ID=Potri.006G062300.2.v4.1 annot-version=v4.1 ATGGCAAATTTCACCTTCAAAGCAGAGAACTTTTCCTCTCTCTCACACCACACAAACACACAAACCTCACTCTTGAACACGACCACCTCATTCAAGACCA ATTCTTTACGTTTATTACACTCTAAAAACAGCTTGACGTTCAGGGTTTGGTGTGGTATTAAAGAGAAAGAGAATGTGACAGGAAGTGAGAGGGTCCCTGA TGTACTCACTGGACCAAAAAGAGTTGATGAGTTGGACCCCAAGAGGGGTTCAAGTTTGGATTTTGAGCAAAAATTGGGGAATGATAGTGGGTCTAGTGAA GTGGGTTTTGATTGGAATTGGCCTCCATGGAAGAATATTCCTCAGAGATATAAGCTTATTGGCACCACGTCACTTGCCTTCGTTATTTGCAATATGGACA AGGTGAACTTGAGTGTTGCTATAATTCCTATGTCACACCAATTTGGGTGGAATGCATCAACGGCTGGGCTAGTGCAGTCATCCTTCTTTTGGGGTTATGC TTTGAGTCAATTGCCAGGAGGTTGGCTTGCCAAGATTTTTGGTGGGAGAAAAGTTCTTAAGTTTGGAGTTTTGACATGGTCAGTGGCCACAGCACTTCTT CCTTTTCTTGCTGGATATATGCCTGGACTTGTGTTGTCAAGGGTTTTGGTTGGAATAGGAGAAGGAGTTTCGCCATCGGCAGCAACTGACCTCATTGCCA GGTCAATACCTTTGGAAGAGCGATCACGAGCTGTAGCATTCGTCTTTGGGGGACTGAGTGTAGGAAGTGTTATAGGGCTTCTTTTAGCTCCTCCCCTTAT TCAGAATTTTGGTTGGGCATCTGTATTTTATATATTTGGCTTTCTTGGGTTAGCCTGGTTTTTGGGGTTTCAATATCTTGAAGAGGGGCAAGCTTCACAC TCTGCCAAGCCTGCTTCACGGCCCCAATCTATCCATATGGAAAAATCTTTTAGTAATTCTCTTGCAGCGTTGGGTGGCTCACTGAAGGATGTGCCCTGGA AGGCTTTTTTCCGAACCCCAGCTGTATGGGCAATGATATATGCTCACTTTTGTGGAAGTTGGGGTCACTATAACTGTTTATCTTGGCTTCCTTCTTATTT CAGTGAGGAGCTGAGCCTGAATTTGACAGAAGCTGCATGGGTTTCCATCCTTCCTCCCTTGGCTTCAGTTTTTGTGACTAGCTTTGCCGCACAGCTCGCT GACAACTTAATTGCTAATGGAGTTGAAACCACTACGGTGCGAAAGATTTGCCAAACAATTGCCTTCTTGTCTCCTGCTCTTTGCATGACGCTCTCCTCTG TTGATCTAGGACTTCCACCCTGGGAGATTGTGGGGATTCTCACTTGTGGCTTGGCCCTCTCAAGCTTTGCCTTGTCAGGACTTTACTGTACACATCAAGA TATGTCTCCTGAATATGCAAGTATACTGTTGGGCATTACCAACACCGTTGGAGCAATACCTGGAATTGTAGGTGTTGCCTTGACTGGTTATCTTCTTGAT ACAACTCATTCGTGGAGTATTTCTTTATTCGCACCATCAATTTTCTTCTACTTGACTGGTACGATTGTATGGTTGGCATTTGCCAGCAGCAAGCCTCAAA ACTTCTCCAACACAGATTGA
AA sequence Show only first row Show all	>Potri.006G062300.2 pacid=42770622 polypeptide=Potri.006G062300.2.p locus=Potri.006G062300 ID=Potri.006G062300.2.v4.1 annot-version=v4.1 MANFTFKAENFSSLSHHTNTQTSLLNTTTSFKTNSLRLLHSKNSLTFRVWCGIKEKENVTGSERVPDVLTGPKRVDELDPKRGSSLDFEQKLGNDSGSSE VGFDWNWPPWKNIPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNASTAGLVQSSFFWGYALSQLPGGWLAKIFGGRKVLKFGVLTWSVATALL PFLAGYMPGLVLSRVLVGIGEGVSPSAATDLIARSIPLEERSRAVAFVFGGLSVGSVIGLLLAPPLIQNFGWASVFYIFGFLGLAWFLGFQYLEEGQASH SAKPASRPQSIHMEKSFSNSLAALGGSLKDVPWKAFFRTPAVWAMIYAHFCGSWGHYNCLSWLPSYFSEELSLNLTEAAWVSILPPLASVFVTSFAAQLA DNLIANGVETTTVRKICQTIAFLSPALCMTLSSVDLGLPPWEIVGILTCGLALSSFALSGLYCTHQDMSPEYASILLGITNTVGAIPGIVGVALTGYLLD TTHSWSISLFAPSIFFYLTGTIVWLAFASSKPQNFSNTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	0	1
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	3.87	0.9276
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	7.41	0.9227
AT1G73110			P-loop containing nucleoside t...		Potri.001G037300 [exp]	10.95	0.9248
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	11.53	0.9195
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.006G229300 [exp]	14.96	0.9110	gdcP1,Pt-GDCP.2
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	17.14	0.9257
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	17.23	0.9144	ATMGT10.1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	20.24	0.9175
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	21.35	0.9193
AT3G01060			unknown protein		Potri.017G090100 [exp]	21.72	0.9239

Compare expression of checked genes

Potri.006G062300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.