Plant FIBer expression Database

Potri.006G062600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G34930 859 / 0 arogenate dehydrogenase (.1)
AT1G15710 421 / 2e-142 prephenate dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G201100
[exp]
432 / 4e-147 AT1G15710 469 / 2e-166 prephenate dehydrogenase family protein (.1)
Potri.008G074500
[exp]
287 / 6e-92 AT5G34930 295 / 5e-96 arogenate dehydrogenase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023121
[exp]
431 / 5e-146 AT1G15710 483 / 8e-172 prephenate dehydrogenase family protein (.1)
Lus10011483
[exp]
242 / 5e-76 AT1G15710 253 / 2e-84 prephenate dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02153 PDH Prephenate dehydrogenase
Representative CDS sequence
>Potri.006G062600.2 pacid=42768205 polypeptide=Potri.006G062600.2.p locus=Potri.006G062600 ID=Potri.006G062600.2.v4.1 annot-version=v4.1
ATGCCCTCTTTCTCTTCTCTCCGCCTTCCACCTCCAAAACCTTCTCTTCTCTCTCTCTCCCCTGTCCCTCCCTGTTTACCACCGTCAAAATCTCTCATTT
TCACTCCCAGGATCAAACCCATGACCACCACAACCCTCTCTCCCCGCCTCCAATCCTCCTGTTCCTCCTCCGCCACCAAAGCGAACCCAAAAAACCAAAC
CCAAAATCCCTCTTCGTACGATTTAAAAATAGCTATAATTGGCTTTGGCAACTATGGCCAATTCCTCGCCAAGACCCTCATTTCTCAAGGCCACACAGTC
CTTGCTCACTCAAGATCAGACCATTCTCTTGCAGCCAAATCCCTTGGTGTCTCTTTCTTTTTGGACCCTCATGATCTCTGTGAGCGACACCCAGATGTCA
TTTTACTTTGCACGTCAATTATTTCAACTGAAACAGTGCTAAAGTCTTTGCCTTTACAAAGACTAAAGAGAAACACATTGTTTGTTGATGTGTTATCTGT
GAAAGAATTTGCTAAGAATGTATTGCTTGATGTATTGCCTCATGATTTTGATATCATTTGTAGCCACCCCATGTTTGGTCCTCAGAGTGCAAAACATGGG
TGGGATGGTCTTTATTTTGTTTACGAGAATGTGAGGATCGGTAATGAGGAAAATAGAGTTAATAGGTGTAAAAAGTTTCTGGAAATTTTTGAAAGAGAAG
GGTGTAAAATGGTGGAAATGAGTTGTCAAGAACATGATAAGTATGCCGCGGAATCACAGTTTTTAACGCATACTGTGGGGAGAGTGTTGGAGATGTTGAA
ATTGGAGTCCACGCCGATTAATACTAAAGGGTATGAGAGTTTGCTGGATTTGGTGGAGAATACTTCAGGGGATAGTTTTGATCTGTATTACGGGTTGTTT
ATGTATAATAGGAATGTGCTTGAGATGTTGGAGAGGTTAGACTTGGCCTTTGAGGATTTGAGGAAGCAGCTCTTTGGAAGGTTACATGAGGTTGTGAGGA
AGCAGCTGTTTGGGAATGCGGAGAGCCGTAAAGTCGTGCAAGAGAATTACAGTAAAGGGCACCTCAATGGTGCTGCTGCATTATCATCTAGTTCAAAATC
TGTGAGATTTCAGGGCTCTGCCCAGACATACAAGTACGAGGCAGAGAACTCAAGCTGCTCTGATGACAGCTCCAAGATCAAGATTGCTATTGTTGGATTT
GGAAACTTTGGTCAGTTCCTTGCAAAAACCTTTGTTCAACAGGGTCACTCAGTTTTAGCCTATTCTAGAGCGAACTACTCTGATGCGGCTCAAAGGCTTG
GGGTCTCTTATTTCTCTAATGCAGATGACCTCTGTGAAGAGCATCCAGAAGTGATTGTTCTTTGTACTTCTATTCTCTCGACAGAAAAGGTTCTCAAGTC
ATTACCATTTCAGAGACTGAAGAGAAGTACTCTTTTTGTTGATGTACTTTCAGTGAAAGAGTTTCCAAGGAATCTGTTTCTTCAACATTTACCATCGCAT
TTTGATATTCTCTGTACTCATCCTATGTTTGGACCTGAAAGTGGTAAAAATGGGTGGAACCGGCTGGCGTTTGTTTTTGAGAAGGTCAGGATTGGAAGTG
AAGGTTCAAGAGTATCACGATGCGATAAGTTTCTTGATATTTTTGCTCGAGAAAGATGCAGAATGGTGGAGATGTCTTGTGCAGAGCATGATTGGTATGC
TGCGGGATCACAGTTCATTACACACACCATGGGACGGGTTTTGGAAAAGTTAGGAATGGAGTCAACTCCAGTTAACACTAAAGGCTATGAAACTTTGTTG
AATTTGGTGGAAAATACAGCTGGGGATAGCTTTGATCTGTACTATGGTTTGTTCATGTACAATGTAAATGCAATGGAGCAGTTAGAGAGGTTGGATTTGG
CTTTTGAATCATTGAAGGATCAGCTGTTTGGACGGTTGCATGGAGTTCTCAGGAAGCAATTGTTTGGGAGTTCAGACAACTCTCAAGACTTGAGTGAGGA
ACCTTCGGATGCAAAATTCTCTCAAAATAGTGCTGCACTGGTGTCTTCTTGTTTGGAGACTCTTAATGCTGAAAATAATTAA
AA sequence
>Potri.006G062600.2 pacid=42768205 polypeptide=Potri.006G062600.2.p locus=Potri.006G062600 ID=Potri.006G062600.2.v4.1 annot-version=v4.1
MPSFSSLRLPPPKPSLLSLSPVPPCLPPSKSLIFTPRIKPMTTTTLSPRLQSSCSSSATKANPKNQTQNPSSYDLKIAIIGFGNYGQFLAKTLISQGHTV
LAHSRSDHSLAAKSLGVSFFLDPHDLCERHPDVILLCTSIISTETVLKSLPLQRLKRNTLFVDVLSVKEFAKNVLLDVLPHDFDIICSHPMFGPQSAKHG
WDGLYFVYENVRIGNEENRVNRCKKFLEIFEREGCKMVEMSCQEHDKYAAESQFLTHTVGRVLEMLKLESTPINTKGYESLLDLVENTSGDSFDLYYGLF
MYNRNVLEMLERLDLAFEDLRKQLFGRLHEVVRKQLFGNAESRKVVQENYSKGHLNGAAALSSSSKSVRFQGSAQTYKYEAENSSCSDDSSKIKIAIVGF
GNFGQFLAKTFVQQGHSVLAYSRANYSDAAQRLGVSYFSNADDLCEEHPEVIVLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPSH
FDILCTHPMFGPESGKNGWNRLAFVFEKVRIGSEGSRVSRCDKFLDIFARERCRMVEMSCAEHDWYAAGSQFITHTMGRVLEKLGMESTPVNTKGYETLL
NLVENTAGDSFDLYYGLFMYNVNAMEQLERLDLAFESLKDQLFGRLHGVLRKQLFGSSDNSQDLSEEPSDAKFSQNSAALVSSCLETLNAENN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G34930 arogenate dehydrogenase (.1) Potri.006G062600
[exp]
0 1
AT5G48230 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoac... Potri.014G168700
[exp]
12.12 0.8236
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Potri.004G102500
[exp]
12.76 0.8478 MANG.1
AT3G10050 OMR1 L-O-methylthreonine resistant ... Potri.006G118400
[exp]
18.43 0.8363
Potri.010G226050
[exp]
20.12 0.7980
AT1G58120 unknown protein Potri.002G104500
[exp]
21.84 0.8357
AT5G07610 F-box family protein (.1) Potri.013G110300
[exp]
21.95 0.7162
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.002G094800
[exp]
23.15 0.8349
Potri.009G113550
[exp]
24.67 0.8042
AT1G73325 Kunitz family trypsin and prot... Potri.019G124400
[exp]
25.80 0.8248
AT1G73325 Kunitz family trypsin and prot... Potri.019G124750
[exp]
26.15 0.8220

Potri.006G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.