Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30270 752 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 637 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT2G26980 603 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 598 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G35410 525 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT4G24400 499 / 1e-175 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G45820 471 / 2e-164 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 454 / 7e-158 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT4G18700 447 / 2e-154 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G10930 446 / 2e-154 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G119200 [exp] 828 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 625 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 624 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.002G177900 [exp] 622 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 621 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G130500 [exp] 522 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 512 / 1e-180 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.011G067500 [exp] 489 / 2e-171 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 479 / 7e-168 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042816 [exp] 783 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 780 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 614 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10002692 [exp] 608 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 548 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 530 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 491 / 3e-172 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021488 [exp] 483 / 4e-170 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10036280 [exp] 477 / 9e-167 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 476 / 1e-166 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.006G062800.1 pacid=42767826 polypeptide=Potri.006G062800.1.p locus=Potri.006G062800 ID=Potri.006G062800.1.v4.1 annot-version=v4.1 ATGTCGTCTTCTAGAAGTGGTGGAAGCGGAAGCAGGACACGCGTGGGGAGGTATGAGCTCGGAAGGACTCTCGGAGAAGGAACTTTTGCGAAGGTGAAAT TTGCTAGGAACGTTGAGACGGGAGAGAATGTTGCTATTAAGATTCTCGATAAAGAGAAAGTTCTTAAACACAAAATGATCGGTCAGATTAAACGGGAGAT TTCAACAATGAAATTAATTAGACACCCGAATGTCGTCCGCATGTATGAGGTGATGGCGAGCAAGACCAAAATATACATTGTTTTAGAATTTGTGACGGGT GGTGAACTTTTCGACAAGATTGCAAGTAAAGGGAGGTTGAAGGAGGATGAAGCGAGAAAGTATTTTCAGCAACTTATCAATGCCGTGGACTACTGCCATA GCAGAGGTGTATACCACAGAGATCTAAAGCCTGAGAATCTGCTATTGGATGCTAGTGGGTTTCTTAAAGTTTCGGATTTTGGATTGAGTGCACTACCTCA GCAAGTTAGAGAAGATGGGTTACTTCACACAACGTGTGGAACACCAAATTATGTTGCTCCAGAGGTGATCAACAATAAAGGCTATGATGGCGCCAAGGCA GATTTGTGGTCATGTGGTGTGATTCTTTTTGTCTTGATGGCTGGGTACTTGCCTTTTGAAGAATCCAACCTTATGGCACTATACAAAAAGATATTCAAGG CTGACTTCACATGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAACTAATCAAAAGAATTCTGGACCCTAATCCTTCAACACGTATTACCATTTCCGAGCT TATTGAAAATGAATGGTTTAAGAAAGGATATAAGCCACCTACTTTTGAAAAGGCTAATGTTAGTCTCGACGATGTGGACTCTATCTTCAATGAATCAATG GATTCTCAAAACCTTGTTGTGGAGAGGCGAGAAGAAGGGTTTATAGGGCCTATGGCTCCTGTAACCATGAATGCGTTTGAACTTATCTCTACCTCTCAGG GTCTCAACCTTAGTAGTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGGGAAACGAGATTCACTTCCAAACATTCTGCTAGCGAGATAATCTCGAAAAT TGAAGCAGCAGCAGCGCCTCTGGGTTTTGATGTAAAGAAAAATAACTTTAAGATGAAGCTTCAAGGGGAGAAGGATGGACGCAAGGGTCGTTTATCTGTT TCAACAGAGGTCTTTGAAGTGGCCCCTTCTCTTTATATGGTTGAGGTTCGCAAGTCTGATGGTGATACCCTGGAATTTCATAAGTTTTACAAGAACCTTT CAACTGGGCTGAAAGACATCGTATGGAAAACGATTGATGAAGAAGAGGAAGAAGAGGCAGCGACAAATGGTGTTGCTCGGGTTACTGCACGATAA
AA sequence Show only first row Show all	>Potri.006G062800.1 pacid=42767826 polypeptide=Potri.006G062800.1.p locus=Potri.006G062800 ID=Potri.006G062800.1.v4.1 annot-version=v4.1 MSSSRSGGSGSRTRVGRYELGRTLGEGTFAKVKFARNVETGENVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVVRMYEVMASKTKIYIVLEFVTG GELFDKIASKGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKPENLLLDASGFLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKA DLWSCGVILFVLMAGYLPFEESNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPSTRITISELIENEWFKKGYKPPTFEKANVSLDDVDSIFNESM DSQNLVVERREEGFIGPMAPVTMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKHSASEIISKIEAAAAPLGFDVKKNNFKMKLQGEKDGRKGRLSV STEVFEVAPSLYMVEVRKSDGDTLEFHKFYKNLSTGLKDIVWKTIDEEEEEEAATNGVARVTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G062800 [exp]	0	1
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Potri.014G049200 [exp]	6.92	0.8094
					Potri.005G201350 [exp]	10.48	0.8068
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	16.52	0.8102
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	17.49	0.8050	Pt-DET1.1
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	23.95	0.7482
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	25.37	0.7892
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	26.94	0.7782
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.001G036000 [exp]	28.39	0.7548
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	28.46	0.7801
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Potri.003G037800 [exp]	29.69	0.7696

Compare expression of checked genes

Potri.006G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.