Plant FIBer expression Database

AVP.5 (Potri.006G063000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol AVP.5
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15690 1337 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
AT1G16780 438 / 8e-142 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1)
AT1G78920 429 / 8e-139 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G119500
[exp]
1411 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.005G018700
[exp]
1248 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.013G009400
[exp]
1247 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Potri.010G254200
[exp]
443 / 3e-144 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Potri.008G003502
[exp]
142 / 2e-37 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039977
[exp]
1359 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10038111
[exp]
1358 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10038114
[exp]
1147 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10008828
[exp]
670 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10008044
[exp]
564 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10034800
[exp]
449 / 3e-146 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Lus10008042
[exp]
432 / 2e-138 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Lus10033345
[exp]
351 / 1e-108 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03030 H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence
>Potri.006G063000.1 pacid=42769730 polypeptide=Potri.006G063000.1.p locus=Potri.006G063000 ID=Potri.006G063000.1.v4.1 annot-version=v4.1
ATGGTTTCGGTGATTTTGCCAGATCTGGGAACGGAGATTCTGATTCCGGTATGTGCCATTATTGGAATCGGATTCTCTCTCCTTCAGTGGCTGTTGGTTT
CCAAGGTCAAGCTTGTACCGAGTCCTGCGGCGTCGAATAACAGTGGTGCTGCTGGAAAGAATGGGTACGGTGACTACTTGATTGAGGAAGAAGAAGGCCT
TAATGACCATAATGTTGTTCTTAAATGTGCTGAGATTCAAAATGCCATCTCTGAAGGTGCAACTTCTTTCCTTTTCACTGAATATCAATATGTTGGAATT
TTCATGGTTGCTTTTGCAATATTGATTTTCGTTTTCCTTGGCTCTGTTGAGGGATTCAGCACTAAGAGTCAGCCCTGCACATATGATCTCTTGAAGATGT
GCAAGCCTGCTCTTGCCACTGCTGGCTTCAGCACCGTAGCCTTTGTGCTTGGTGCTGTCACTTCAGTGGTTTCTGGCTTTCTTGGGATGAAAATTGCAAC
CTATGCTAATGCCAGAACCACCCTGGAGGCAAGAAAAGGAGTTGGGAAGGCTTTTATCATTGCATTTAGATCTGGGGCAGTCATGGGTTTTCTCCTTGCT
GCAAATGGACTCTTGGTGCTTTACATTACCATCAATGTCTTCAAGCTATACTATGGTGATGACTGGGAAGGGCTTTTTGAGTCTATAACTGGCTATGGAC
TTGGAGGATCTTCCATGGCTCTCTTTGGCAGAGTTGGTGGAGGTATCTACACCAAAGCTGCTGATGTTGGTGCTGATCTTGTTGGCAAGGTTGAAAGGAA
CATTCCTGAGGATGACCCAAGAAATCCTGCTGTGATCGCTGACAATGTAGGTGATAATGTTGGTGATATAGCTGGCATGGGATCCGATCTTTTTGGCTCA
TACGCCGAGTCCTCTTGTGCTGCCCTAGTTGTTGCTTCCATCTCTTCTTTTGGAATCAATCATGAATTTACTCCAATGCTATATCCTCTCATTGTCAGTT
CTGTGGGAATCATTATTTGTCTGATAACCACCTTATTTGCAACTGATTTCTTTGAGATCAAGGCTGTGAAGGAAATTGAGCCAGCACTAAAGAATCAACT
CATCATCTCAACTATTCTGATGACTGTTGGGGTTGCCATTGTTAGTTGGGTAGCTCTCCCATCTTCCTTTACCATCTTCAATTTTGGAACCCAGAAAGTT
GTCAAGAATTGGCAACTCTTCTTGTGTGTTGCTGTTGGTCTCTGGGCCGGTCTTATTATTGGATTTGTAACCGAGTACTATACTAGCAATGCATACAGCC
CTGTTCAAGATGTTGCTGATTCCTGCCGAACTGGAGCTGCCACTAATGTTATTTTTGGGCTTGCATTGGGATACAAATCTGTCATCATTCCTATCTTTGC
TATCGCAGCCAGCATTTTTGTTAGTTTCTCTTTTGCTGCTATGTATGGTATTGCTGTAGCTGCCCTTGGAATGTTGAGCACCATTGCCACTGGGTTGGCA
ATAGATGCATATGGTCCCATTAGTGACAATGCCGGAGGTATTGCTGAGATGGCAGGCATGAGCCACAGAATCCGAGAAAGAACTGATGCCCTTGATGCTG
CTGGAAACACCACTGCTGCTATTGGGAAGGGATTTGCCATTGGCTCTGCAGCTCTTGTCTCCCTGGCCCTCTTTGGTGCCTTTGTCAGCCGTGCATCTAT
CTCAACAGTCGATGTATTGACTCCAAAAGTTTTCATTGGTTTGATTGTGGGTGCAATGCTTCCTTACTGGTTCTCTGCCATGACAATGAAGAGCGTGGGA
AGTGCAGCACTTAAGATGGTTGAGGAAGTTCGCAGGCAATTCAACACCATCCCTGGCTTGATGGAAGGCACTGCCAAGCCTGACTATGCCACCTGTGTTA
AGATCTCCACTGATGCATCTATCAAGGAGATGATCCCACCTGGTGCACTTGTCATGCTCACACCCCTCATTGTTGGGATCTTTTTCGGTGTTGAAACTCT
ATCTGGTGTCCTTGCTGGATCCCTTGTGTCTGGTGTCCAGATTGCCATCTCTGCCTCCAACACTGGTGGTGCATGGGATAATGCCAAGAAATATATTGAG
GCTGGTGCTTCAGAGCATGCAAGATCTCTTGGCCCTAAAGGATCAGATCCACACAAGGCAGCTGTTATTGGTGACACCATTGGGGATCCATTGAAGGATA
CATCTGGACCATCACTTAACATCCTCATCAAACTGATGGCTGTTGAATCACTCGTCTTTGCTCCATTCTTTGCCACGCACGGTGGCCTGCTCTTCAAGAT
ATTCTGA
AA sequence
>Potri.006G063000.1 pacid=42769730 polypeptide=Potri.006G063000.1.p locus=Potri.006G063000 ID=Potri.006G063000.1.v4.1 annot-version=v4.1
MVSVILPDLGTEILIPVCAIIGIGFSLLQWLLVSKVKLVPSPAASNNSGAAGKNGYGDYLIEEEEGLNDHNVVLKCAEIQNAISEGATSFLFTEYQYVGI
FMVAFAILIFVFLGSVEGFSTKSQPCTYDLLKMCKPALATAGFSTVAFVLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFIIAFRSGAVMGFLLA
ANGLLVLYITINVFKLYYGDDWEGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS
YAESSCAALVVASISSFGINHEFTPMLYPLIVSSVGIIICLITTLFATDFFEIKAVKEIEPALKNQLIISTILMTVGVAIVSWVALPSSFTIFNFGTQKV
VKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIFVSFSFAAMYGIAVAALGMLSTIATGLA
IDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVG
SAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIE
AGASEHARSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.006G063000
[exp]
0 1 AVP.5
AT1G09210 AtCRT1b calreticulin 1b (.1) Potri.013G009500
[exp]
1.00 0.9215
AT1G20010 TUB5 tubulin beta-5 chain (.1) Potri.002G021800
[exp]
3.46 0.9106
AT5G18400 Cytokine-induced anti-apoptosi... Potri.005G198900
[exp]
4.00 0.8937
AT5G64570 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XY... Potri.001G206800
[exp]
4.24 0.9039 XYL4.2
AT1G72480 Lung seven transmembrane recep... Potri.003G068500
[exp]
6.00 0.8925
AT1G62640 KAS III, KASIII 3-ketoacyl-acyl carrier protei... Potri.001G120900
[exp]
7.74 0.8955 Pt-KAS.2
AT3G13772 AtTMN7 transmembrane nine 7 (.1) Potri.003G038700
[exp]
8.77 0.9011
AT1G63000 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-... Potri.003G120000
[exp]
9.89 0.9059
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
10.72 0.9075
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Potri.008G132500
[exp]
14.69 0.9043

Potri.006G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.