Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39140 65 / 5e-12 RING/U-box superfamily protein (.1.2.3.4.5) AT1G75400 63 / 3e-11 RING/U-box superfamily protein (.1) AT2G21500 62 / 5e-11 RING/U-box superfamily protein (.1.2) AT5G18260 58 / 9e-10 RING/U-box superfamily protein (.1) AT1G19680 53 / 4e-08 RING/U-box superfamily protein (.1) AT1G14180 50 / 5e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G119600 [exp] 385 / 2e-137 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.004G158400 [exp] 70 / 8e-14 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.005G231500 [exp] 69 / 1e-13 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.009G120000 [exp] 66 / 2e-12 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.013G060900 [exp] 65 / 4e-12 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 65 / 6e-12 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 63 / 3e-11 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 50 / 5e-07 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008046 [exp] 142 / 6e-42 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10020256 [exp] 71 / 4e-14 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 71 / 9e-14 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10041970 [exp] 67 / 2e-12 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10017978 [exp] 67 / 2e-12 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10036764 [exp] 61 / 1e-10 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 58 / 2e-09 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.006G063100.2 pacid=42768525 polypeptide=Potri.006G063100.2.p locus=Potri.006G063100 ID=Potri.006G063100.2.v4.1 annot-version=v4.1 ATGGGGAAGAGAAAGAGAAGTAGTGGTGATCATAACAAGACCAAGTGCACTTCTTCTTCGGATGACTTGCCATGCTCTTCTGGAACAGAATTGTTGTCTA GAGAGAAATCTTATTTGCTAGAGTCTAGTGAATCAAGGCCTCTCATACCCATGGTGGATACTTCAGATAACACTGTAAAGGTATTGAATGCGCAACATTC TCATGCACATCAGAATCACAACCTTGGCCGTTCAATAGTCTTGAAACGATCACGACACTACTATGGTCATCAGTACTCCCGGAGAAACTTGGGGAGCCAT GCTGATGCATCAACTTCTCATGGGAAGACTGCCCTTTCACGTAATGAGAGGCTTACCTTCAAGCTTATCAGTCAACCAGGCTCCAAGCCTGGGTGCCATA CAGAAAACAAGGAAATAGAATTTAGCAGGCCAGACAGGGTTAGATTCAGTTCCTTGGTAATGAATGCAGTTTCATCTGATGCAGTGAAGATGGTATGTGG AATCTGTCAGAAACTAGTGAGAAGGAAAAATTATTTTCTAGGAAATGCATTAACTACTGGTGAATTCTCTGTTGTGGCCATTCTAGTTTGCGGTCATGTT TATCATTCAGAATGTTTGGAGCAGAAAACAAGTATTGAAGATATGCGTGACCCTCCCTGCCCATTGTGCTCGGGCTTGCTCTCTGAAGCAGATGCCTCTA GAGAAGAAGAGTAA
AA sequence Show only first row Show all	>Potri.006G063100.2 pacid=42768525 polypeptide=Potri.006G063100.2.p locus=Potri.006G063100 ID=Potri.006G063100.2.v4.1 annot-version=v4.1 MGKRKRSSGDHNKTKCTSSSDDLPCSSGTELLSREKSYLLESSESRPLIPMVDTSDNTVKVLNAQHSHAHQNHNLGRSIVLKRSRHYYGHQYSRRNLGSH ADASTSHGKTALSRNERLTFKLISQPGSKPGCHTENKEIEFSRPDRVRFSSLVMNAVSSDAVKMVCGICQKLVRRKNYFLGNALTTGEFSVVAILVCGHV YHSECLEQKTSIEDMRDPPCPLCSGLLSEADASREEE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39140			RING/U-box superfamily protein...		Potri.006G063100 [exp]	0	1
AT3G13570		SCL30A, At-SCL3...	SC35-like splicing factor 30A ...		Potri.016G062500 [exp]	14.69	0.7385
AT2G24960			unknown protein		Potri.017G120900 [exp]	16.61	0.7258
AT4G29520			unknown protein		Potri.018G067300 [exp]	23.91	0.7694
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.002G203600 [exp]	25.41	0.7179
AT1G02305			Cysteine proteinases superfami...		Potri.014G109801 [exp]	25.63	0.7333
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	25.98	0.7573
AT1G69980			unknown protein		Potri.008G191700 [exp]	39.52	0.7165
AT5G13070			MSF1-like family protein (.1)		Potri.001G018500 [exp]	39.94	0.6811
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.006G256200 [exp]	40.98	0.7236
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Potri.001G470500 [exp]	41.49	0.6917

Compare expression of checked genes

Potri.006G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.