Plant FIBer expression Database

Potri.006G063300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20410 691 / 0 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
AT2G11810 662 / 0 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2)
AT4G31780 512 / 7e-179 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G123000
[exp]
771 / 0 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Potri.018G016600
[exp]
500 / 3e-174 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Potri.006G266500
[exp]
497 / 5e-173 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008048
[exp]
738 / 0 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Lus10016359
[exp]
736 / 0 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Lus10026895
[exp]
500 / 3e-174 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Lus10003418
[exp]
498 / 2e-173 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF04101 Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain
Representative CDS sequence
>Potri.006G063300.1 pacid=42767545 polypeptide=Potri.006G063300.1.p locus=Potri.006G063300 ID=Potri.006G063300.1.v4.1 annot-version=v4.1
ATGATGAAGGTGCAGGCTCCTCCGAGGAAAACATCATTTACTGAGGTTTTACAAAGAGTTTATAGTAATCTTGGGTCCGTTAGCAGTAATAGTGATAGCA
GCAGCAGCAGCGACAGCTATAATTGCAACAATCTACAAAAGCTTAAGTATTATATCCAAGAGAGTGACGATGATTTTGAAGAGGAAGATGGGACCATGGA
ACTTGTTCAAATTGGTGCTGAGAGAGCCAAGAATGTTTTGATCCTTATGAGTGATACAGGTGGTGGTCATCGTGCTTCTGCTGAAGCCATTCGTGATGCT
TTCAAGCTTGAATATGGTGATGAATACAGGATAATTGTGAAGGATGTTTGGAAAGAGTACACAGGCTGGCCATTGAATGATATGGAGAGGCAATACAAAT
TCATGGTGAAACACGTACAGCTATGGAAGGTGGCATTTCACAGTACTTCTCCAAGATGGATACACTCCAGCTATCTTGCCGCTATCGCTGCCTACTATGC
CAAGGAGGTGGAGGCTGGTCTAATGGAGTACAAACCGGATATAATTATCAGTGTTCATCCCATGATGCAGCATATTCCTTTGTGGGTTCTGAAATGGCAA
GGCTTACAAAAGAAAGTGATTTTTGTTACAGTCATCACCGACCTCAATAGCTGCCATCCTACATGGTTTCATCCTGGGGTGAATAGATGCTTCTGCCCAT
CAGAGGAGGTTGCCAAGAGGGCTGCATTAGATGGCCTAGAAGATTCTCAGATTCGTGTTTTTGGTTTGCCTATCCGGCCATCTTTTGCTCGTGCAGTTCT
TTCAAAGGATGAGTTAAGAGAAGAGCTTGAACTGGACCCTAGTTTGCCTGCGGTTTTACTGATGGGAGGTGGTGAAGGTATGGGTCCTGTTAAGAAAACT
GCATTGGCTCTTGGAGAATCGTTGTTTGATAAAGAACTTGGGAAACCACTTGGGCAATTGATCATCATTTGTGGCCGTAATAAGGTTCTTAAATCTACAT
TGGAATCTCATGAATGGACAATCCCAGTTAAGGTTAGAGGATTTGAGACACAGATGGAGAAATGGATGGGAGCTTGTGACTGCATAATTACAAAAGCTGG
ACCTGGCACTATTGCAGAAGCATTGATAAGGGGGCTACCTATTATTCTCAACGACTACATTCCGGGACAAGAAAAGGGAAATGTTCCTTATGTGGTAGAC
AATGGGGCTGGTGTCTTCACCAGAAGTCCTAAAGAAACAGCAAAAATTGTGACAGAATGGTTTTGCACGAAAACAGATGAACTTGAAAGAATGTCAGAGA
ATGCACTCAAACTAGCCCAACCGGAGGCTGTTTTTGACATCATAAAGGACATTCATGAACTCGCACAAGCACGCGGTCCTCTTGTGAATATCCCTTATGT
ATTGACAGCATCTTTCACAAGCATAATCTGA
AA sequence
>Potri.006G063300.1 pacid=42767545 polypeptide=Potri.006G063300.1.p locus=Potri.006G063300 ID=Potri.006G063300.1.v4.1 annot-version=v4.1
MMKVQAPPRKTSFTEVLQRVYSNLGSVSSNSDSSSSSDSYNCNNLQKLKYYIQESDDDFEEEDGTMELVQIGAERAKNVLILMSDTGGGHRASAEAIRDA
FKLEYGDEYRIIVKDVWKEYTGWPLNDMERQYKFMVKHVQLWKVAFHSTSPRWIHSSYLAAIAAYYAKEVEAGLMEYKPDIIISVHPMMQHIPLWVLKWQ
GLQKKVIFVTVITDLNSCHPTWFHPGVNRCFCPSEEVAKRAALDGLEDSQIRVFGLPIRPSFARAVLSKDELREELELDPSLPAVLLMGGGEGMGPVKKT
ALALGESLFDKELGKPLGQLIIICGRNKVLKSTLESHEWTIPVKVRGFETQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPYVVD
NGAGVFTRSPKETAKIVTEWFCTKTDELERMSENALKLAQPEAVFDIIKDIHELAQARGPLVNIPYVLTASFTSII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20410 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALAC... Potri.006G063300
[exp]
0 1
AT5G06510 CCAAT NF-YA10 "nuclear factor Y, subunit A10... Potri.006G201900
[exp]
2.64 0.8610
AT3G04860 Plant protein of unknown funct... Potri.005G050000
[exp]
8.06 0.8062
AT5G16770 MYB ATMYB9 myb domain protein 9 (.1.2) Potri.001G139900
[exp]
15.49 0.8183
AT5G61790 CNX1, ATCNX1 calnexin 1 (.1) Potri.001G070600
[exp]
15.87 0.7970
AT5G05800 unknown protein Potri.001G268908
[exp]
21.49 0.8058
AT1G27660 bHLH bHLH110 basic helix-loop-helix (bHLH) ... Potri.005G119601
[exp]
30.39 0.7776
AT1G19880 Regulator of chromosome conden... Potri.005G236000
[exp]
31.17 0.8132
AT3G21240 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) Potri.006G169700
[exp]
31.46 0.7677
Potri.007G048600
[exp]
33.74 0.8032
AT3G47730 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, AT... Potri.015G063500
[exp]
34.05 0.8208 Pt-ATH1.1

Potri.006G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.