Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60430 322 / 1e-114 ARPC3 actin-related protein C3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G123100 [exp] 349 / 3e-125 AT1G60430 332 / 2e-118 actin-related protein C3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006335 [exp] 322 / 4e-114 AT1G60430 332 / 3e-118 actin-related protein C3 (.1.2) Lus10018909 [exp] 321 / 6e-114 AT1G60430 330 / 9e-118 actin-related protein C3 (.1.2) Lus10029603 [exp] 322 / 1e-112 AT1G60430 329 / 1e-115 actin-related protein C3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04062 [poplar] [flax] P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit
Representative CDS sequence Show only first row Show all	>Potri.006G063400.2 pacid=42767905 polypeptide=Potri.006G063400.2.p locus=Potri.006G063400 ID=Potri.006G063400.2.v4.1 annot-version=v4.1 ATGGTTCATCACTCTAGTTTCGTGGATGAGGAGGGAGTGAAAAAAGCTTGTGGCTGTCCTTTGCTTCCGTTGAAAAGTCATATAAAGGGTCCTGCTCCAG TTTCGGATCAAGATAGAACTGATATAGTTGATGAAGCAATCACGTTTTTTCGTGCCAATGTTTTCTTTAGAAAATTTAATATTCAGAGCCCAGCAGATAA GCTCCTTATTTACTTAACGTTCTACATCAATGTGGCTTTGAAGAGGCTTGAGGGTTGTAGAACTTTGGCTGAAGGTACCAAGGCAATAATTAACTTGGGT TTGGAGAAGGTTTCTGTGCCTGGAGAGTCTGGTTTTCCTTTCCCGGGTCTTTTTGCGGATCCTCAATCTCAGAAGGAAGCAGAGCTCTTCAGAAAGTATC TTAAACAGACAAGGGAGGAAACAAGTGGGAGATTACTGAGTGTCGCATATAGACCCAATGGGACTCCAAACAAATGGTGGTTGGCATTTGCCAAGAGGAA ATTCATGAATATCATTGCTCTTTGA
AA sequence Show only first row Show all	>Potri.006G063400.2 pacid=42767905 polypeptide=Potri.006G063400.2.p locus=Potri.006G063400 ID=Potri.006G063400.2.v4.1 annot-version=v4.1 MVHHSSFVDEEGVKKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRKFNIQSPADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLG LEKVSVPGESGFPFPGLFADPQSQKEAELFRKYLKQTREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.006G063400 [exp]	0	1
AT5G19070			SNARE associated Golgi protein...		Potri.010G030800 [exp]	1.41	0.8993
AT4G25680			PPPDE putative thiol peptidase...		Potri.017G143132 [exp]	5.19	0.8831
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	6.08	0.9019
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Potri.018G086400 [exp]	13.11	0.8813
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	20.97	0.8770
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	23.23	0.8517	SYP61.1
AT1G21930			unknown protein		Potri.002G086300 [exp]	23.36	0.8445
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077200 [exp]	26.45	0.8267
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.010G238500 [exp]	29.12	0.8371
AT1G32050			SCAMP family protein (.1)		Potri.001G134100 [exp]	29.24	0.8673

Compare expression of checked genes

Potri.006G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.