Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05500 847 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 776 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 283 / 7e-89 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 240 / 4e-72 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 238 / 4e-71 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 234 / 8e-70 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 159 / 2e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 153 / 9e-40 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21010 88 / 3e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 71 / 2e-12 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 1007 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 793 / 0 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G150700 [exp] 279 / 2e-87 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 279 / 2e-87 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 249 / 2e-75 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.008G038300 [exp] 244 / 1e-73 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 239 / 9e-72 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 237 / 5e-71 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 231 / 2e-68 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038117 [exp] 887 / 0 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 779 / 0 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 771 / 0 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 639 / 0 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 366 / 5e-122 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 271 / 1e-84 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 271 / 6e-84 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10027709 [exp] 254 / 3e-80 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 237 / 1e-70 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 236 / 2e-70 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G063900.3 pacid=42767471 polypeptide=Potri.006G063900.3.p locus=Potri.006G063900 ID=Potri.006G063900.3.v4.1 annot-version=v4.1 ATGTCGTTTTTTGTTGGATTGATTATCGGTCTTGCTGTCGGTCTAGCATTGATTGTTGGTTTTGTCAAGTCTGAGAATGCAAGATCCAAGCTTCGGTCTG AGCTTGCAATAGCTATAGCTGCTTTTGCAAGAATGACAGTGGAGGATTCAAGAAAGATCTTGCCAGCTGAGTACTACCCTTCTTGGGTTGTCTTCTCTCA GCGCCAGAAGTTGGATTGGCTTAATCAACATCTTACAAAGATCTGGCCTTATGTTGACCAGGCAGCTTCTGGGCTGATAAAGGATTCAGTGGAACCTGTC CTTGAGCAATATAGACCGATTATATTGTCATCTCTCAAATTTTCGAAGTTTACTCTTGGTACTGTTGCGCCCCAATTTACAGGAGTTTCTATCATTGAAG ATGGAGGCAGTGGCATCACCATGGAGTTGGAAATGAACTGGGATGGGAATCCAAGTATAATACTTGATATTAAGACTAGACTTGGCGTTTCTTTGCCTGT ACAGGTAAAAGATATCGGATTTACTGGGGTTTTCAGGTTGATCTTTAAGCCACTAGTTGCTGAGTTTCCTTGCTTTGGAGCTGTTTGTTGTTCTTTGAGA CAAAAGAAAAAAATGGATTTTAAACTTAAAGTTGTTGGTGGTGATATATCTGCAATTCCAGGACTTGATGATGCTATTCAGGAGACAATACAGAATGCTG TTGAAGATTCTATTACCTGGCCTGTTCGGAAAGTTGTTCCAATTTTGCCTGGGGATTACAGTGACCTGGAGTTAAAGCCTGTGGGAATATTGGAGGTGAA GCTTGTGCAGGCAAAGGATTTGACGAATAAAGATCTCATTGGGAAATCTGATCCCTTCGCCAAGTTATACATACGCCCTTTACCTGATAAAACGAAAACC ACCAAAATAATTAACAATGATCTGAATCCAATATGGAACGAACACTTTGAATTTGTTGTTGAAGATGCAACTACTCAACACTTGGTAGTAAAAATTTATG ATGATGAGGGGATACAGGCAGCTGAGCTCCTCGGGTGCGCCCAAGTAAAACTAAATGAGCTTGAGCCTGGTAAAGTGAAGGATTTGTGGTTGAAGCTGGT TAAGGATTTGGAGGTCCAACGAGATAATAAAAACAGGGGGCAGGTGCACCTGGAACTTTTGTACCGTCCTTTTGGTATGGAGAATGGCCTTGGCAACTCT TTTGCCTCCAGCTTCTCAATGACTTCTTTAGAGAAGGTACTTAAAAACGGCGCAAACAGTATGGAAATTACTGGAAATGTAAATGAAGTCACAAAGAAGA GAAGAGAGGTTATCGTTAGAGGAGTTCTCTCTGTCACTGTCATTTCTGCAGAAGATCTGCCAGTGGTGGATTTGATGGGTAAGGCTGACCCCTTTGTTAC ACTAACAATGAAGAAATCGGAGATGAGAAACAAAACCAGGGTTGTGAACAACAACTTGAATCCTGTTTGGAATCAAACTTTTGACTTTGTTGTTGAGGAT GGACTACATGATATGCTTATTGTCGAAGTTTGGGATCATGACACATTTGGGAAGGATTATATGGGGAGATGCATCCTGACTTTGACCAGGGTTATATTGG AAGGCGAATACAAAGATTGCTTCCAACTTGACGAGGCTAAATCCGGAAGATTAAATTTGCACCTCAAGTGGTCGCCACAGCATATTTATCGCGATTCTTG A
AA sequence Show only first row Show all	>Potri.006G063900.3 pacid=42767471 polypeptide=Potri.006G063900.3.p locus=Potri.006G063900 ID=Potri.006G063900.3.v4.1 annot-version=v4.1 MSFFVGLIIGLAVGLALIVGFVKSENARSKLRSELAIAIAAFARMTVEDSRKILPAEYYPSWVVFSQRQKLDWLNQHLTKIWPYVDQAASGLIKDSVEPV LEQYRPIILSSLKFSKFTLGTVAPQFTGVSIIEDGGSGITMELEMNWDGNPSIILDIKTRLGVSLPVQVKDIGFTGVFRLIFKPLVAEFPCFGAVCCSLR QKKKMDFKLKVVGGDISAIPGLDDAIQETIQNAVEDSITWPVRKVVPILPGDYSDLELKPVGILEVKLVQAKDLTNKDLIGKSDPFAKLYIRPLPDKTKT TKIINNDLNPIWNEHFEFVVEDATTQHLVVKIYDDEGIQAAELLGCAQVKLNELEPGKVKDLWLKLVKDLEVQRDNKNRGQVHLELLYRPFGMENGLGNS FASSFSMTSLEKVLKNGANSMEITGNVNEVTKKRREVIVRGVLSVTVISAEDLPVVDLMGKADPFVTLTMKKSEMRNKTRVVNNNLNPVWNQTFDFVVED GLHDMLIVEVWDHDTFGKDYMGRCILTLTRVILEGEYKDCFQLDEAKSGRLNLHLKWSPQHIYRDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	0	1
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G169500 [exp]	1.73	0.8233	RAP15
AT2G41890			curculin-like (mannose-binding...		Potri.016G053800 [exp]	3.46	0.7246
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.001G282600 [exp]	7.93	0.7107
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	8.30	0.7098
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	9.89	0.7211
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	10.09	0.7669
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Potri.007G011600 [exp]	12.48	0.7645
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	13.07	0.7392
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	14.69	0.7423	MYB222
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	17.83	0.7510

Compare expression of checked genes

Potri.006G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.