Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33280 1182 / 0 Voltage-gated chloride channel family protein (.1) AT5G49890 917 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT3G27170 830 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 817 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G26240 561 / 0 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124100 [exp] 1372 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.003G001500 [exp] 951 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 944 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 890 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 878 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.001G331700 [exp] 818 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 573 / 0 AT5G26240 1149 / 0.0 chloride channel D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038118 [exp] 1197 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10007433 [exp] 928 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 928 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10012526 [exp] 826 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 576 / 0 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 561 / 0 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 257 / 2e-79 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 174 / 7e-50 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain PF00654 [poplar] [flax] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Potri.006G064000.3 pacid=42768493 polypeptide=Potri.006G064000.3.p locus=Potri.006G064000 ID=Potri.006G064000.3.v4.1 annot-version=v4.1 ATGTCAACAAATTCTATCAATAGGGAAGCAAACACAGACCAAGAGTCTCTTATAATTCCTCTCCTGTCCCCTCGAAGATCACTCATTAACTCCACTTCTC AAGTTGCCATCGTTGGAGCTAATGTCTGCCCCATTGAAAGTCTTGATTATGAGATTGCTGAGAATGAGTTCTTTAAACAAGATTGGAGGAGTCGTGGAAA GATGCAAATATTTCAGTATGTGTTCATGAAGTGGTCGCTTTGTTTCTTGATCGGACTTATTGTTAGCCTTATTGGGTTTTTTAACAATCTTGCTGTTGAA AATATTGCTGGCTTGAAGTTTGTGGTCACCTCCAATATGATGCTGGCCAAAAGGTTTGGGATGGCTTTTCTTGTGTTCTCAGTTTCTAATTTGATTCTTA CCCTGTTTGCATCCATCATCACGGCTTTTATAGCACCAGCTGCTGCTGGTTCAGGTATTCCAGAAGTTAAGGCTTACCTGAATGGTGTGGATGCACCTGG AATTTTTTCCTTGCGAAGTTTGGTTATTAAGATTATTGGAAGCATTTCTGCGGTGTCCTCGTCTCTTTTTGTTGGAAAGGCAGGGCCAATGGTGCACACT GGAGCATGTGTTGCAGCATTGCTTGGTCAGGGTGGATCCAAGAGATTTAAATTAACATGGAGATGGCTTCGTTTTTTCAAAAATGACCGAGACCGACGGG ATCTTGTAACATGTGGATCAGCTGCTGGAATAGCTGCTGCCTTCCGTGCCCCAGTTGGAGGTGTGCTGTTTGCACTTGAAGAAATGGCATCTTGGTGGAG AAGTGCCCTTCTTTGGAGAGCTTTCTTCACAACAGCAGTAGTTGCAATAGTGCTTCGGGCTCTGATTGACGTCTGTTTAAGTGGAAAATGTGGGCTATTT GGAAAAGGAGGGCTCATAATGTTTGATGTGTATTCAGCAAGTGTTACGTACCACCTCATTGATGTACCACCTGTGTTCGCCCTTGGAGTTATAGGAGGCA TATTGGGAAGTTTGTATAACTTCCTTCTAGACAAGGTTCTTCGAATATACAATCTCATCAATGAGAAAGGCGTTGTTTACAAAATTTTACTTGCTTGTGC AATTTCCATTTTCACATCCTGTCTTCTTTTTGGACTACCATGGCTTGCCTCTTGCCAACCCTGTCCATCTGATGCGTCGGAAGCTTGTCCAACAATAGGC CGGTCTGGTAATTTCAAGAAATTTCAATGTCCTCCTGGACAGTACAATGATCTGGCCAGCCTTATATTTAACACAAATGATGATTCTGTTAAAAATCTTT TCAGCCAGGACACCAACTCTGAGTTTCAATATTCGTCAATTCTCATATTCTTTGTGACCTGCTTCTTTCTTAGTATCTTTAGCTATGGGATTGTTGCCCC CGCGGGTTTATTCATACCAGTTATCGTGACGGGTGCATCTTATGGACGTTTTGTTGGAATGCTAGTTGGTTCACACTCAAATCTTGATCACGGCCTCTAT GCTGTCTTAGGTGCTGCTTCATTTCTAGGCGGATCTATGAGGATGACAGTTTCTCTGTGTGTCATTATTCTAGAATTGACAAATAATCTGTTGATGCTAC CCTTGATAATGCTTGTTCTTCTTATTTCCAAGACTGTGGCTGATGCTTTCAATGGTAATATTTATGACCTTATCATGAATGCGAAGGGTTTTCCTTACCT AGAAGCTCACACCGAGCCTTATATGAGGCAGTTGACAGTTGGTGAAGTAGTTAGGGGTCCACTTCAGATCTTTCAGGGCATTGAAAAGGTTGGCAAAATA GTACATGTTCTAAGAACTACGAGGCATAATGGATTTCCTGTAATTGATGAGCCTCCGCTTTCTGAGTCTCCAGTTCTTTATGGTCTAATCCTCCGTGCTC ATCTAATTGAATTGCTAAAGAAGAAAGCTTTTGTGCCAACTCCAGTACCAACAGGCACTGATGCCTTCAAGCTGTTCTTTGCTGGTGATTTTGCAAAGAG GGGCTCAGGCAATGGAGACAAGATAGAGGATCTGCAATTTACCGAAGAAGAGATGGAGATGTTTTTAGATTTACATCCATTTACGAATGCTTCACCTTAT ACTGTTGCGGAGACAATGTCACTGGCTAAGGCTCTCATACTTTTCCGAGAAGTTGGTTTGAGGCATTTACTGGTGATACCCAAGATATCTGGTAGGTCCC CTGTTGTGGGTATATTGACTAGGCACGATTTCATGCCAGGGCATATACTTGGTCTGCATCCTATGCTGATTAGAAGCAGGTGGAAAAGATTAAGAATCCA GGCACCTCGTTTATTCAAACTCTTCTAG
AA sequence Show only first row Show all	>Potri.006G064000.3 pacid=42768493 polypeptide=Potri.006G064000.3.p locus=Potri.006G064000 ID=Potri.006G064000.3.v4.1 annot-version=v4.1 MSTNSINREANTDQESLIIPLLSPRRSLINSTSQVAIVGANVCPIESLDYEIAENEFFKQDWRSRGKMQIFQYVFMKWSLCFLIGLIVSLIGFFNNLAVE NIAGLKFVVTSNMMLAKRFGMAFLVFSVSNLILTLFASIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFSLRSLVIKIIGSISAVSSSLFVGKAGPMVHT GACVAALLGQGGSKRFKLTWRWLRFFKNDRDRRDLVTCGSAAGIAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTTAVVAIVLRALIDVCLSGKCGLF GKGGLIMFDVYSASVTYHLIDVPPVFALGVIGGILGSLYNFLLDKVLRIYNLINEKGVVYKILLACAISIFTSCLLFGLPWLASCQPCPSDASEACPTIG RSGNFKKFQCPPGQYNDLASLIFNTNDDSVKNLFSQDTNSEFQYSSILIFFVTCFFLSIFSYGIVAPAGLFIPVIVTGASYGRFVGMLVGSHSNLDHGLY AVLGAASFLGGSMRMTVSLCVIILELTNNLLMLPLIMLVLLISKTVADAFNGNIYDLIMNAKGFPYLEAHTEPYMRQLTVGEVVRGPLQIFQGIEKVGKI VHVLRTTRHNGFPVIDEPPLSESPVLYGLILRAHLIELLKKKAFVPTPVPTGTDAFKLFFAGDFAKRGSGNGDKIEDLQFTEEEMEMFLDLHPFTNASPY TVAETMSLAKALILFREVGLRHLLVIPKISGRSPVVGILTRHDFMPGHILGLHPMLIRSRWKRLRIQAPRLFKLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33280			Voltage-gated chloride channel...		Potri.006G064000 [exp]	0	1
AT2G14520			CBS domain-containing protein ...		Potri.009G082300 [exp]	1.00	0.8648
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	1.41	0.8312
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	7.34	0.8020
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	7.74	0.8196
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	7.74	0.8257
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	9.16	0.8222
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009400 [exp]	14.83	0.8203
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Potri.006G233800 [exp]	17.88	0.7808	ELF3.3
					Potri.013G032900 [exp]	22.80	0.7998
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.003G072300 [exp]	25.98	0.7863

Compare expression of checked genes

Potri.006G064000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.