Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 48 / 2e-08 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 38 / 6e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 38 / 9e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 37 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 36 / 0.0004 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124501 [exp] 71 / 3e-18 AT3G18990 59 / 3e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 43 / 1e-06 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 39 / 2e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 38 / 5e-05 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 38 / 6e-05 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 38 / 9e-05 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 36 / 0.0003 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 36 / 0.0003 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 36 / 0.0004 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012041 [exp] 42 / 4e-06 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 41 / 5e-06 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10022473 [exp] 41 / 5e-06 AT3G18990 78 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 41 / 5e-06 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 41 / 6e-06 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 40 / 1e-05 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010080 [exp] 40 / 2e-05 AT4G31680 75 / 8e-16 Transcriptional factor B3 family protein (.1) Lus10025507 [exp] 39 / 3e-05 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025506 [exp] 39 / 3e-05 AT3G18990 79 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 39 / 4e-05 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G064100.2 pacid=42767839 polypeptide=Potri.006G064100.2.p locus=Potri.006G064100 ID=Potri.006G064100.2.v4.1 annot-version=v4.1 ATGGCATCGTTTATATTTCAGAATGGCTGGGAAGATTTTGTGGATTTGTACTCTCTTAAGAAGAGAGATCTGCTAGTTTTTGAATACAAGGGAAATTCCA AGTACTCTGTATTTGTATGTAAAGAAATGGACTGCCCAGCTGGTGCCTGGTGA
AA sequence Show only first row Show all	>Potri.006G064100.2 pacid=42767839 polypeptide=Potri.006G064100.2.p locus=Potri.006G064100 ID=Potri.006G064100.2.v4.1 annot-version=v4.1 MASFIFQNGWEDFVDLYSLKKRDLLVFEYKGNSKYSVFVCKEMDCPAGAW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.006G064100 [exp]	0	1
AT2G32645			Domain of unknown function (DU...		Potri.011G139000 [exp]	3.87	0.6988
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.014G074000 [exp]	9.16	0.7186
					Potri.009G042350 [exp]	9.48	0.6758
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	17.54	0.6918
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	22.58	0.6757
					Potri.006G168300 [exp]	23.06	0.6405
AT1G03990			Long-chain fatty alcohol dehyd...		Potri.002G259700 [exp]	25.09	0.6497
					Potri.015G072732 [exp]	27.34	0.6734
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.008G008551 [exp]	34.20	0.6645
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	36.22	0.6474

Compare expression of checked genes

Potri.006G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.