Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CRCK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 508 / 3e-177 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT4G00330 339 / 1e-112 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 335 / 2e-110 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT3G46290 246 / 2e-72 HERK1 hercules receptor kinase 1 (.1) AT1G06840 239 / 2e-69 Leucine-rich repeat protein kinase family protein (.1) AT1G10620 235 / 2e-69 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70460 235 / 2e-69 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G30570 237 / 3e-69 HERK2 hercules receptor kinase 2 (.1) AT2G39360 236 / 5e-69 Protein kinase superfamily protein (.1) AT5G54380 236 / 6e-69 THE1 THESEUS1, protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124600 [exp] 820 / 0 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 353 / 8e-118 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 353 / 9e-118 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 325 / 2e-106 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.017G096400 [exp] 241 / 2e-74 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.011G164700 [exp] 244 / 5e-72 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.010G145600 [exp] 244 / 8e-72 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 244 / 1e-71 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 243 / 2e-71 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028613 [exp] 602 / 0 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 573 / 0 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10041796 [exp] 560 / 0 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 497 / 2e-173 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018828 [exp] 352 / 4e-117 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 347 / 2e-115 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 349 / 1e-114 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10040704 [exp] 329 / 8e-108 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 331 / 4e-103 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10014760 [exp] 332 / 2e-102 AT4G00350 703 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G064200.3 pacid=42769198 polypeptide=Potri.006G064200.3.p locus=Potri.006G064200 ID=Potri.006G064200.3.v4.1 annot-version=v4.1 ATGGCCACGGCTGCATTAATTATATTCTTATTGATGCAATTTCGGATTATACTGGCCTCGGGGTTTGTGATACAGTCAAAGGTTTGTGGTTCTGATCATA TAGCCTATTCAAATTGTCACGGTCATGAATTGTTCTACATTAACGGGGAGCTCAAAGAAAAAGAATCATTTTGCAAGGCCCTCCATTCCTTCGACGTAAA TGATTGTACCTTTGAGAACTACCTTGGGAGTAGCTGCAGTGGATTGGACCTGGATCTTTCATTAGCTGACTCTCCTCTCAAGCCTGAAAGAAGTCTTTTG CAAAAGGAGGTAAGAGAAGAATCCCCGAGTCATGATCTTAGTCAGGATACTCCAAAAGAGAAAACTCTTTCACCCCCCTATAAAGCTGGGATAGGAGCAG CAGGAGTTATTGTGATGTGTTGTACTTTTCTCTGCCCCTGTCTATATAAGAAAAAGAAAGCAACCACACACACTGTTCTTGAAAAGGATCCAAAGTCAAC GGATTCAATATCCCCTTTCAATGTGAATTCTGCTTCTGAAAAAGTGCCGCCTAGTCCACTTCGGGTGCCCCCTAGTCCCTCTAGATTCTCTCAGTCTCCA AAACTCAGTAGATTAGGATCAGTTCATCTCAATTTGCAGCAGGTTGCTAGAGCCACACGCAATTTTTCGCCATCACTTCAGATAGGAGAAGGAGGCTTTG GAACTGTATACAAGGCCGAACTAGATGACGGTCAGGTGGTTGCCATAAAACGAGCAAAGAAGGAACACTTTGCGAACTTGCGAACTGAATTCAGCAGTGA AGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTGGTGAAGTTGCTTGGTTATGTTGATAAAGGAAATGAACGGCTTATTATTACAGAGTATGTGCCC AATGGTACTCTCAGAGAACATTTGGATGTCCAGCGTGGCAAAATCCTGGATTTCAACCAGCGGCTTGAAATATCTATTGATGTTGCTCATGGATTAACTT ATCTCCATCTATATGCAGAGAAGCAAATTATCCATCGAGATGTGAAGTCATCCAACATTCTGTTGACAGAGAGTATGAGAGCTAAAGTAGCAGACTTTGG ATTTGCAAGGATGGGTCCAGTAGACTCTGATCAAACTCATATCTCAACCAAAGTGAAAGGGACAGTGGGTTACCTAGACCCAGAATATATGAGGACCTAT CAACTTACTCCCAAGAGTGATGTGTACTCATTTGGGATTTTACTTCTAGAAATCCTGACAGGACGCCGCCCTGTGGAGCCGAGGAAACCTGCTGATGAGC GGGTGACACTGAGATGGGTCTTTAAGAAGTACAACGAAGGAAATGTAGTGGACATGGTGGATCGGCTTATGGAAGAAAAGGTGGACACGGAGGTACTGTA CAGCATGTTTACATTAGCAATCCAGTGTGCAGCACCCATCCGATCTGAACGACCAGACATGAAAGTAGTTGTAGAGCATTTGTGGGGAATAAGGGCAGAG TACCTGAAAGGTGTAAAGAAAGGGTAA
AA sequence Show only first row Show all	>Potri.006G064200.3 pacid=42769198 polypeptide=Potri.006G064200.3.p locus=Potri.006G064200 ID=Potri.006G064200.3.v4.1 annot-version=v4.1 MATAALIIFLLMQFRIILASGFVIQSKVCGSDHIAYSNCHGHELFYINGELKEKESFCKALHSFDVNDCTFENYLGSSCSGLDLDLSLADSPLKPERSLL QKEVREESPSHDLSQDTPKEKTLSPPYKAGIGAAGVIVMCCTFLCPCLYKKKKATTHTVLEKDPKSTDSISPFNVNSASEKVPPSPLRVPPSPSRFSQSP KLSRLGSVHLNLQQVARATRNFSPSLQIGEGGFGTVYKAELDDGQVVAIKRAKKEHFANLRTEFSSEVELLAKIDHRNLVKLLGYVDKGNERLIITEYVP NGTLREHLDVQRGKILDFNQRLEISIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARMGPVDSDQTHISTKVKGTVGYLDPEYMRTY QLTPKSDVYSFGILLLEILTGRRPVEPRKPADERVTLRWVFKKYNEGNVVDMVDRLMEEKVDTEVLYSMFTLAIQCAAPIRSERPDMKVVVEHLWGIRAE YLKGVKKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	0	1	Pt-CRCK3.1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.007G048900 [exp]	1.41	0.7802
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	2.82	0.7608
AT4G27190			NB-ARC domain-containing disea...		Potri.013G027300 [exp]	6.63	0.7701
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	11.53	0.7096
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	15.09	0.7437
					Potri.010G192501 [exp]	15.68	0.7630
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	18.33	0.6802
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.015G137900 [exp]	19.07	0.6720
AT5G13590			unknown protein		Potri.010G213800 [exp]	20.00	0.7287
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	32.68	0.7194

Compare expression of checked genes

Potri.006G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.