Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 526 / 0 Exostosin family protein (.1) AT5G11130 503 / 7e-176 Exostosin family protein (.1) AT3G42180 493 / 4e-172 Exostosin family protein (.1.3) AT5G33290 479 / 3e-166 XGD1 xylogalacturonan deficient 1 (.1) AT5G03795 417 / 1e-141 Exostosin family protein (.1) AT3G07620 397 / 2e-134 Exostosin family protein (.1) AT5G25310 375 / 8e-126 Exostosin family protein (.1) AT4G16745 310 / 1e-99 Exostosin family protein (.1.2) AT5G19670 289 / 7e-91 Exostosin family protein (.1) AT4G32790 283 / 9e-89 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064700 [exp] 576 / 0 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 566 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 564 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 559 / 0 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.T124707 [exp] 557 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 557 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G124832 [exp] 557 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064800 [exp] 541 / 0 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 520 / 0 AT5G20260 530 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027707 [exp] 553 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 509 / 2e-178 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 481 / 5e-166 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10039142 [exp] 439 / 7e-150 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 434 / 1e-147 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 410 / 1e-139 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10001917 [exp] 405 / 5e-137 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10008751 [exp] 393 / 5e-132 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 377 / 2e-128 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001958 [exp] 305 / 6e-101 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.006G064600.2 pacid=42767281 polypeptide=Potri.006G064600.2.p locus=Potri.006G064600 ID=Potri.006G064600.2.v4.1 annot-version=v4.1 ATGGCAACCTTTAGTTGCCCCATACATTTCATTCTGCTCTCAACCATTTTTCTCCTCCTACTTATCTACAACTCTCCATTATTCAAAAACAATCAAACTA TAATTTCCCCTCCTTTAACCCCAATATTTCCATTATTCAAAAACAATCAAACTATAATTTCCCCTCCTTTAACCCCAATATTTAACCAACACAAATCTAA CAGCAACACCACTCAAGTTCTTCCACAAGTTGGGTCACCTTTAACTTCTACCAATATTGCTCTAAACAATAGCATTGTTAGCCACAAAAAGAAGAAGAGT GGTATAGAGAGAATTGAAGCAGATTTAGTAAATGCGAGGGTGGCTATACAAGAAGCAATTCGAAGAAAGAACTATACATTAACTGAGAAGGAGGATGCTT TCATTCCCAGAGGATCCATGTACAGAAATGCATACGCATTTCATCAGAGTTATTCAGAGATGGTAAAGAGATTCAAGATATGGGTCTACAGGGAAGGAGA GACGCCCATGGTTCACAACGGGCCCATGAAACATATCTATTCAATTGAGGGCCAGTTCATCGATGAAATGGAGAGTGGGAAGAGCCCATTTTTAGCCCGC AATCATGATGAGGCCCATGCATTTTTCCTACCAATCAGCGTGGCTTACATTGTTGAGTTCGTTTACTTGCCTATCACCACCTATCATCGTGAAAGACTAG TAAGAATCTTCAAGGACTATGTTACAGTCGTAGCAAATAAATATCCTTACTGGAACAGAAGCAGAGGTGGTGACCATTTTATGGTTTCTTGCCATGATTG GGCACCACAGGTCTCGAGAGATGACCCAGAACTATACAAGAATCTGATAAGAGTGATGTGTAATGCCAACACTTCTGAAGGATTCCGACCAAGAAGAGAT GCTACACTGCCGGAGCTGAACTGCCCCCCCTTAAAACTCACTCCAGCATGCCGTGGCTTAGCTCCCCACGAACGCAAGATCTTCGCATTTTTTGCAGGAG GTGCGCACGGAGACATACGCAAAATCTTGCTTAGACATTGGAAGGAAAAAGATGACGAGATCCAAGTTCATGAATACTTACCAAAGGATCAAGATTACAT GGAATTAATGGGGCAAAGCAAGTTTTGTTTGTGCCCTAGCGGTTTTGAAGTGGCTAGTCCTAGAGTGGCGGAGTCAATTTATTCAGGATGTGTTCCGGTT ATTATTTCTGACCATTATAATTTACCCTTCAGTGATGTTCTTGACTGGAGCCAGTTTTCGGTACAAATTCCAGTGGAGAAAATTCCTGAAATTAAGACAA TTTTGAGAGGAATTTCGTATGATGAGTACCTGAAAATGCAGAAGGGAGTGATGAAAGTGCAAAGGCATTTTGTGCTTAACCGACCGGCTAAGCCATATGA TGTTCTTCATATGGTGCTTCACTCAGTGTGGCTTAGGAGGCTCAACATTAGGGTGCCTCATTGA
AA sequence Show only first row Show all	>Potri.006G064600.2 pacid=42767281 polypeptide=Potri.006G064600.2.p locus=Potri.006G064600 ID=Potri.006G064600.2.v4.1 annot-version=v4.1 MATFSCPIHFILLSTIFLLLLIYNSPLFKNNQTIISPPLTPIFPLFKNNQTIISPPLTPIFNQHKSNSNTTQVLPQVGSPLTSTNIALNNSIVSHKKKKS GIERIEADLVNARVAIQEAIRRKNYTLTEKEDAFIPRGSMYRNAYAFHQSYSEMVKRFKIWVYREGETPMVHNGPMKHIYSIEGQFIDEMESGKSPFLAR NHDEAHAFFLPISVAYIVEFVYLPITTYHRERLVRIFKDYVTVVANKYPYWNRSRGGDHFMVSCHDWAPQVSRDDPELYKNLIRVMCNANTSEGFRPRRD ATLPELNCPPLKLTPACRGLAPHERKIFAFFAGGAHGDIRKILLRHWKEKDDEIQVHEYLPKDQDYMELMGQSKFCLCPSGFEVASPRVAESIYSGCVPV IISDHYNLPFSDVLDWSQFSVQIPVEKIPEIKTILRGISYDEYLKMQKGVMKVQRHFVLNRPAKPYDVLHMVLHSVWLRRLNIRVPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20260			Exostosin family protein (.1)		Potri.006G064600 [exp]	0	1
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	1.41	0.9694
AT4G37710			VQ motif-containing protein (....		Potri.007G006200 [exp]	1.41	0.9733
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Potri.001G399200 [exp]	1.73	0.9683
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021500 [exp]	4.47	0.9664
AT3G62760		ATGSTF13	Glutathione S-transferase fami...		Potri.014G132200 [exp]	5.19	0.9611	Pt-ATGSTF13.1
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	5.29	0.9678
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.008G136300 [exp]	5.65	0.9642
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	6.00	0.9655
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	7.74	0.9548
AT5G23850			Arabidopsis thaliana protein o...		Potri.002G157900 [exp]	7.74	0.9440

Compare expression of checked genes

Potri.006G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.