Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 543 / 0 Exostosin family protein (.1) AT5G11130 489 / 4e-170 Exostosin family protein (.1) AT3G42180 473 / 7e-164 Exostosin family protein (.1.3) AT5G33290 460 / 2e-158 XGD1 xylogalacturonan deficient 1 (.1) AT5G03795 390 / 6e-131 Exostosin family protein (.1) AT5G25310 372 / 4e-124 Exostosin family protein (.1) AT3G07620 364 / 3e-121 Exostosin family protein (.1) AT4G16745 305 / 2e-97 Exostosin family protein (.1.2) AT5G19670 287 / 6e-90 Exostosin family protein (.1) AT4G32790 286 / 2e-89 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125058 [exp] 833 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 833 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 736 / 0 AT5G20260 530 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 702 / 0 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 627 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 626 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 541 / 0 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G124832 [exp] 514 / 2e-180 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124507 [exp] 513 / 1e-179 AT3G42180 526 / 0.0 Exostosin family protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 508 / 1e-177 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 489 / 2e-168 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10027707 [exp] 483 / 9e-168 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 415 / 4e-140 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 411 / 4e-138 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 391 / 4e-131 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10025178 [exp] 384 / 5e-129 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 382 / 2e-127 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 347 / 3e-116 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10002799 [exp] 298 / 1e-93 AT5G25820 627 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.006G064800.4 pacid=42769754 polypeptide=Potri.006G064800.4.p locus=Potri.006G064800 ID=Potri.006G064800.4.v4.1 annot-version=v4.1 ATGGCAACTTTAAGTTGCTCCCCCCTGAGTTTTCTGCTGCTAGCAGCTCTTGTTTCCACCTTGTTTTTTGTTTGCTTATCTCCCTTCAATTACCAAACTA TCAAAGTTTCTAGCCGTTTGTCGTCTTTTTATACATATAATTATACTTTTGAAAGGCTTCAACCTCTTCCCTCACCAGTTGCACTGCAACCACCACCGAA CACCACTGTTGGAGATGATCAAGAAATCACTAATTGGAGGAACAAAGGAAAGATTTCTGAAAGGCTCCAACCATCACCAGCACCAATTTCATTGCCAGTG CAGAACAGTTCTGTAGTTTTTAGCGGCCCCGGCATTCCAGTAATTACCAGGCATGAAAAGAAAATTAAGACAGGTTTTGAGAGAATTGAAGAAGGCTTAG CTATAGCAAGAGCAGCTATTTACAAAGCAGTTCGGTCGCAAAACTCGTCATCATACAAGAAGGGGAGCTACGTTCCCAGAGGAGCCATGTACAGAAACCA ATATGCTTTTCATCAGAGTTACGAAGAAATGGAGAAAAGATTCAAGGTGTGGATTTACAAGGAAGGGGAGCTGCCAGTCGTCCATGGTGGGCCAGTGAAC GACATCTACAGCATTGAAGGGCAGTTTCTTGATGAAATGGAGAGCGGCAAAAGCCAGTTTATTGCTCGCCATCCTGAGGAAGCACAGGCTTTTCTACTCC CCGTAAGTGTGGCCTATATCATCCACTACGTCTACAGGCCTCGGATTACCTTCTCTCGAGATCAACTCCAGCGTTTGGTCACAGATTATGTTCGTGTTAT AGCTGATAAGCACCCCTACTGGAATAGAACCCACGGAGCTGATCATTTCTCCGTTTCTTGCCATGATTGGGCACCAGATGTCTCAAGGGCCGATCCTGGA CTCTTCAAGTACTTCATCAGAGCCCTTTGCAATGCCAATACATCTGAAGGGTTTCAGCCCCAAAGAGATGTCTCGATACCAGAAATCTTCCTTCCTGTTG GCAAGCTCGGACCACCCCAGGAATACGCTCAGCCCCCGAGTAAGCGTTCAATCCTTGCCTTCTTTGCGGGTGGAGCTCATGGTCATATAAGGAAGATCTT ATTGGAACGCTGGAAAGAAAAGGATGATGAGATCCAAGTCCATGAGTACCTTACTCGAAAGAACAAAAAAAACAGTAATCTTTACTTTGAATTAATGGGT CAAAGCAAGTTTTGCTTGTGCCCAAGCGGGCATGAAGTAGCGAGTCCTAGAGTGGTAACAGCAATTCAATTGGGATGTGTTCCTGTGACCATCTCCGATA ACTATTCATTGCCATTTAGTGATGTTCTTGATTGGAGCAAGTTCTCCGTTGACATTCCGTCGGAAAAGATACCTGATATTAAGATAATTTTGAAAGGAAT TTCGGTTCGACGGTATCTTACAATGCAAAGAAGAGTGATGCAAATTCGAAGACATTTCACGTTGAATCGACCTGCTCAGCCGTATGACATGCTTCATATG ATACTTCATTCTGTATGGTTAAGGAGGCTTGATGTCAAGCTTCCATGA
AA sequence Show only first row Show all	>Potri.006G064800.4 pacid=42769754 polypeptide=Potri.006G064800.4.p locus=Potri.006G064800 ID=Potri.006G064800.4.v4.1 annot-version=v4.1 MATLSCSPLSFLLLAALVSTLFFVCLSPFNYQTIKVSSRLSSFYTYNYTFERLQPLPSPVALQPPPNTTVGDDQEITNWRNKGKISERLQPSPAPISLPV QNSSVVFSGPGIPVITRHEKKIKTGFERIEEGLAIARAAIYKAVRSQNSSSYKKGSYVPRGAMYRNQYAFHQSYEEMEKRFKVWIYKEGELPVVHGGPVN DIYSIEGQFLDEMESGKSQFIARHPEEAQAFLLPVSVAYIIHYVYRPRITFSRDQLQRLVTDYVRVIADKHPYWNRTHGADHFSVSCHDWAPDVSRADPG LFKYFIRALCNANTSEGFQPQRDVSIPEIFLPVGKLGPPQEYAQPPSKRSILAFFAGGAHGHIRKILLERWKEKDDEIQVHEYLTRKNKKNSNLYFELMG QSKFCLCPSGHEVASPRVVTAIQLGCVPVTISDNYSLPFSDVLDWSKFSVDIPSEKIPDIKIILKGISVRRYLTMQRRVMQIRRHFTLNRPAQPYDMLHM ILHSVWLRRLDVKLP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	0	1
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	2.82	0.8991
AT1G68570			Major facilitator superfamily ...		Potri.016G032000 [exp]	7.74	0.8593	Pt-NITR1.1
					Potri.014G049100 [exp]	10.90	0.8655
AT1G69870		NRT1.7	nitrate transporter 1.7 (.1)		Potri.010G034700 [exp]	12.72	0.8550
AT1G31410			putrescine-binding periplasmic...		Potri.003G105100 [exp]	16.61	0.8527
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.014G073500 [exp]	18.24	0.8639
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	18.46	0.8611
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	21.30	0.8803
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.010G015200 [exp]	22.24	0.8339
AT5G48730			Pentatricopeptide repeat (PPR)...		Potri.002G243600 [exp]	23.23	0.8714

Compare expression of checked genes

Potri.006G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.