Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20260 516 / 0 Exostosin family protein (.1) AT5G11130 456 / 4e-158 Exostosin family protein (.1) AT5G33290 446 / 2e-153 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 444 / 2e-153 Exostosin family protein (.1.3) AT5G03795 383 / 1e-128 Exostosin family protein (.1) AT5G25310 357 / 5e-119 Exostosin family protein (.1) AT3G07620 356 / 7e-119 Exostosin family protein (.1) AT4G16745 305 / 6e-98 Exostosin family protein (.1.2) AT5G19670 289 / 3e-91 Exostosin family protein (.1) AT4G32790 286 / 5e-90 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064800 [exp] 698 / 0 AT5G20260 556 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 675 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 675 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 612 / 0 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 594 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 594 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 501 / 2e-175 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G124832 [exp] 499 / 8e-175 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.T124507 [exp] 498 / 1e-174 AT3G42180 526 / 0.0 Exostosin family protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 477 / 5e-166 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 464 / 2e-161 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 457 / 8e-157 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10039142 [exp] 389 / 2e-130 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 383 / 4e-129 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10013790 [exp] 380 / 7e-127 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 375 / 2e-125 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10008751 [exp] 368 / 2e-122 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 353 / 1e-119 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10002799 [exp] 289 / 8e-91 AT5G25820 627 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.006G064900.1 pacid=42770140 polypeptide=Potri.006G064900.1.p locus=Potri.006G064900 ID=Potri.006G064900.1.v4.1 annot-version=v4.1 ATGGCAACTTTTCTTAGCTCTCCCATAAATTGTCTACTGCAATCAGCTTTTCTTTCCACTTTGCTTCTCGTCTGCTTATCTCCCTTTTACCAGCCTATCA ATATTTCCAGCCGTTTGTCTTCTTTTTATACTCCTAATTTTCAACCTTATCCATCAACAATTCTGCTGCTACCACCACCAAACACCACTCTTGGTGTTGG CCAGGATGCGCAAATCACCTGGAAGATCAAGAAAATCAAGACGGGTTTCGAGAGAATTGAAGATGGTTTAGCAAGAGCAAGAGATGCCATTTTGAGAGCA ATTCGGTCAAGGAACTCTTCATCATACAAGAAGGGAAGTTACGTACCTAGAGGAGTCATCTACAGAAATCAATATGCTTTTCATCAGAGTCACACAGAGA TGGAGAAAAGATTCAAGATATGGGTTTATAAGGAAGGAGAACTACCTGTTCTCCATGGTGGACCAGTAAACAACATCTATAGCGTTGAAGGTCAATTTCT TGATGAAATAGAGAGGGGCAAAAGCCACTTTATTGCTCGCCATCCTGACGAAGCACATGCATTTCTTCTCCCTTTAAGTGTGGCCTATATCATGCACTAT ATCTATAAACCTCGCGTGACCTTCTCTCGCCACCAACTACAAACCTTGGTCACAGATTATGTTCGTGTTATAGCTGATAAGTACACTTACTGGAACAGAA CCAATGGAGCTGACCATTTCTCAATTTCTTGCCATGATTGGGGGCCAGATATCTCAAGAACCAATCCTGAACTCTTCAAGTATTTTATTAGAGCTCTTTG CAATGCTAATACATCAGAAGGGTTCCAGCCCCAAAGAGATGTCTCGGTACCAGAAATCTTCCTTCATGTTGGCAAGCTTGGACTGCCGCGTGAAGGCGCC CAGCCCCCAAGTAAGCGTCCAATCCTTGCCTTTTTCGCCGGCGGAGCTCATGGTCGCATAAGGAAGGTCTTGTTAAAACGGTGGAAAGACAAGGATGGTG AGATTCAAGTCCACGAGTACGTCACTCAAAGGAAGAAAAATAATAATCTTTACTTCAAATTAATGGGCCAAAGCAAGTTTTGCTTGTGCCCAAGTGGGCA TGAAGTAGCAAGTCCTAGAGTGGTAACGGCGATTCAATTGGGGTGTGTTCCTGTGATCATTTCCGATAACTATTCGTTGCCATTTAGTGATGTTCTTGAC TGGAGCAAGTTCTCCGTAAACATTCCGTCGGAGAAGATACAGGAAATCAAAACAATTTTAAAAGGGATTTCGCATAAAAGATACCTTACAATGCAGAGAA GAGTGATCCAAGCACAGAGACATTTTACGTTGAATCGACCGGCAAAGCCATATGATATGATTCATATGATACTTCATTCGATATGGTTAAGGAGGCTTAA TCATAGGATGCCATAG
AA sequence Show only first row Show all	>Potri.006G064900.1 pacid=42770140 polypeptide=Potri.006G064900.1.p locus=Potri.006G064900 ID=Potri.006G064900.1.v4.1 annot-version=v4.1 MATFLSSPINCLLQSAFLSTLLLVCLSPFYQPINISSRLSSFYTPNFQPYPSTILLLPPPNTTLGVGQDAQITWKIKKIKTGFERIEDGLARARDAILRA IRSRNSSSYKKGSYVPRGVIYRNQYAFHQSHTEMEKRFKIWVYKEGELPVLHGGPVNNIYSVEGQFLDEIERGKSHFIARHPDEAHAFLLPLSVAYIMHY IYKPRVTFSRHQLQTLVTDYVRVIADKYTYWNRTNGADHFSISCHDWGPDISRTNPELFKYFIRALCNANTSEGFQPQRDVSVPEIFLHVGKLGLPREGA QPPSKRPILAFFAGGAHGRIRKVLLKRWKDKDGEIQVHEYVTQRKKNNNLYFKLMGQSKFCLCPSGHEVASPRVVTAIQLGCVPVIISDNYSLPFSDVLD WSKFSVNIPSEKIQEIKTILKGISHKRYLTMQRRVIQAQRHFTLNRPAKPYDMIHMILHSIWLRRLNHRMP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	0	1
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.001G066900 [exp]	1.00	0.8675
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	2.00	0.8314
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	3.74	0.8373
					Potri.013G005300 [exp]	4.89	0.7816
AT1G03055			unknown protein		Potri.005G216400 [exp]	5.47	0.8055
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	6.48	0.7954
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.005G214300 [exp]	8.24	0.7676
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	10.48	0.8128
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Potri.005G221900 [exp]	12.72	0.7944	LBD16.3
AT1G25530			Transmembrane amino acid trans...		Potri.010G128300 [exp]	15.19	0.7375

Compare expression of checked genes

Potri.006G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.