Plant FIBer expression Database

Pt-ATMAK10.3 (Potri.006G065000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATMAK10.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G11000 890 / 0 ATMAK10 MAK10 homologue (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G125171
[exp]
1291 / 0 AT2G11000 862 / 0.0 MAK10 homologue (.1.2)
Potri.T124807
[exp]
1290 / 0 AT2G11000 863 / 0.0 MAK10 homologue (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005185
[exp]
1121 / 0 AT2G11000 889 / 0.0 MAK10 homologue (.1.2)
Lus10038121
[exp]
1120 / 0 AT2G11000 897 / 0.0 MAK10 homologue (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04112 Mak10 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
Representative CDS sequence
>Potri.006G065000.3 pacid=42769857 polypeptide=Potri.006G065000.3.p locus=Potri.006G065000 ID=Potri.006G065000.3.v4.1 annot-version=v4.1
ATGGACCGTCACGCACTGCATCAACCCTCCTCTTCCTCATCAATTCCTGCAACTGCAAACACTGTCTGGGCTGACGCGTCTTCTCTCCTTGAAGCGGCTT
GTAAAGATTTACGCGATGGTGAGCTAATTCACGGTGAGAATTTCAATCTTTACGCTGCAATGTCTGCTTTAGAGATAATGGACCCGAAGATGGATTCTGG
TATCGTCAACAGGTACTGTTCTTTTGATGAAGCAATTGAAGACGGTGTGGCGCCTGTGCCTATTAGCTCTGACAAAACTACTGATGTTCAGTGCATGATT
GACATCATGGACTATCTCTTGACGTGTGAGGCAACATGGCACAAGGGTCACTCATTGGCACAAACTGTTTTTTCCTGCGCCTACCTTCTGAGACCAGAGA
GGACATCATCACATGCCCTACTGCATTCTTATTGCAAAGTCATACGTGCAACATGCAAGGCAGTGATTACAGTTGTCTCAGATGCACGTACTCATGAAGA
AGAGGATCTTTTTACAATGGCTTATGGCCTTCCCCTGAGTGGGGATGGAGATGAAAAGTGCTTGTCATTGTTAAATGCTGTTGAAGAGAATATTTCTCGC
CAACTACGAGCTTGTAAAGCCCCTTCATCCAAAAGAAAACCGTTAGAGGATATAGAGCCTTTACAAACTAATTCTGATCTGGAAGAAGGCTACTGCAAAG
CATTGTTATGCCGCTTACGCTTTCGTAAGCACTTTTTCCATGTTTTAACCTGCATGAGGCGACCTCAAGGAAGAGGTCTAGAGTTGGCAAGAAAACATAT
AGCTTCCTGCATTTCAGAGCTGGGAATAATTCTTAAATCAGCAGAATTCCTAATGTCTAATGCCTATGGAACTTGTGAAGATGGTACAGAAGATAGAACA
ACTGCTTCTGGCCATCAAGCTATTGGGTTTGATGCTAGTTTAAACAGCAGAATTTCAGCCCCAACTCCACCACGTTCAATTAAAATTCTTAGTTGGAAAA
AGGCCATTGAGTATTTTGAAAAACTTCTTCATGATCTAGATATTATATGTTCATACCCGTTGGACCCTTCTTTGGAAGTTCTTTTGCGCTTTGTGGCTCA
ATTTCAAAAAGCACAGCCTGATTTGGTTGCAAGAGCACATCTCCAGCTTCTGTTGGTTCAAGATGGAAAACTCTACGGGCGGTGTCCTATGTTTTCTCTG
ATTATTAGAGCTGCACGTCTTCCTGAGGTCTTTCTGCACCATGATATTCAGAAGAATGAATATGTTGTACAGTTAGGACAGTTAGTGATCAATATGCTCA
AAATTCTTTGCACAAATGCTGCATGGCAGAGGCGTAAACTCGGAAAGATTTTACAAGATTGGCGTGTTATCTATGTACAGATAGAGCTTGCTTTCAGAAA
GGAGTTTGGAGAAGGCTCTAGCGTTTCAAATGGCGAGAATGCATCAGCGAGAATATTAAAACACATCCTCATTTGGGTGGAGGAGCAAACTTATTGGATT
TCCCATCGATTTCTTGTTCTGGGTTTCGAATTAGAGCTCTATTCTCCCAGTGAATATTGCATGGTGTATTGGTATTTGTATGTTGTTCTGATCAGGCTTG
CAGAGAAAACACATCTGAAGATGACAGTGAGCGATGGCAGTGCTAAACAAAAGGGAAAGAAAAGAAAGGATTCTCCAAAGGACCTGGCAAGAGACACTAG
GATTCCTCCTGCAATCTTGTTTCTTCAATGCCAAATATGTCTTGCTGAAGGACTCACACTGCTGCTTGCTGCTTTGAGGAATGAACTGATGGTTTTACAA
TCTCCCAGCCCATTTAATTCTGAACACGAGAGGTTTATACAGCATTTTGAACTTCTACAAAAAGCTTGTATCCCTGATCACATTTCATACCCTTCATTCA
AGGAATCAACATCCTGCGCCCGCTTCTCTACATTAGTTATGTATAATTATTTCAAGGATGCTCAGAATATTGCAAAGGAGGTGAGGAGTGGTTTTTCCAA
TGACCCAGACAGATTAGCTGAACTCCGCGTATTGGAGCAGGTTGCAGAACACAATAGTATTGCCCTCAATGTGATTTGTCAGGTCGGAGCTCTCGATCCG
TCGCTCAAGGTTTCCTTTGAGTTCATCCACCATCCATGTTTTGCCACTGTTGTTGTCAAGAGATCTTGA
AA sequence
>Potri.006G065000.3 pacid=42769857 polypeptide=Potri.006G065000.3.p locus=Potri.006G065000 ID=Potri.006G065000.3.v4.1 annot-version=v4.1
MDRHALHQPSSSSSIPATANTVWADASSLLEAACKDLRDGELIHGENFNLYAAMSALEIMDPKMDSGIVNRYCSFDEAIEDGVAPVPISSDKTTDVQCMI
DIMDYLLTCEATWHKGHSLAQTVFSCAYLLRPERTSSHALLHSYCKVIRATCKAVITVVSDARTHEEEDLFTMAYGLPLSGDGDEKCLSLLNAVEENISR
QLRACKAPSSKRKPLEDIEPLQTNSDLEEGYCKALLCRLRFRKHFFHVLTCMRRPQGRGLELARKHIASCISELGIILKSAEFLMSNAYGTCEDGTEDRT
TASGHQAIGFDASLNSRISAPTPPRSIKILSWKKAIEYFEKLLHDLDIICSYPLDPSLEVLLRFVAQFQKAQPDLVARAHLQLLLVQDGKLYGRCPMFSL
IIRAARLPEVFLHHDIQKNEYVVQLGQLVINMLKILCTNAAWQRRKLGKILQDWRVIYVQIELAFRKEFGEGSSVSNGENASARILKHILIWVEEQTYWI
SHRFLVLGFELELYSPSEYCMVYWYLYVVLIRLAEKTHLKMTVSDGSAKQKGKKRKDSPKDLARDTRIPPAILFLQCQICLAEGLTLLLAALRNELMVLQ
SPSPFNSEHERFIQHFELLQKACIPDHISYPSFKESTSCARFSTLVMYNYFKDAQNIAKEVRSGFSNDPDRLAELRVLEQVAEHNSIALNVICQVGALDP
SLKVSFEFIHHPCFATVVVKRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G11000 ATMAK10 MAK10 homologue (.1.2) Potri.006G065000
[exp]
0 1 Pt-ATMAK10.3
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Potri.008G070300
[exp]
1.00 0.8546 APC1.1
AT3G02280 Flavodoxin family protein (.1) Potri.004G101100
[exp]
1.73 0.8255
AT4G01860 Transducin family protein / WD... Potri.002G189400
[exp]
8.94 0.8217
AT1G17110 UBP15 ubiquitin-specific protease 15... Potri.011G095200
[exp]
10.39 0.7745 Pt-UBP15.2
AT1G04210 Leucine-rich repeat protein ki... Potri.010G081400
[exp]
12.08 0.8287
AT2G37690 phosphoribosylaminoimidazole c... Potri.013G043500
[exp]
16.43 0.7857 PURE.1
AT2G18900 Transducin/WD40 repeat-like su... Potri.006G166500
[exp]
18.43 0.8062
AT4G24900 unknown protein Potri.012G098000
[exp]
21.63 0.7797
AT4G37190 unknown protein Potri.001G361900
[exp]
22.44 0.7415
AT2G17510 EMB2763 EMBRYO DEFECTIVE 2763, ribonuc... Potri.007G059100
[exp]
24.10 0.7900

Potri.006G065000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.