Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35200 620 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 409 / 6e-137 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 402 / 2e-134 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 400 / 3e-133 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 400 / 7e-132 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 216 / 1e-62 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 204 / 5e-58 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 200 / 2e-56 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 144 / 2e-36 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 133 / 5e-33 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G125284 [exp] 847 / 0 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 845 / 0 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 448 / 2e-152 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 442 / 4e-150 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 393 / 1e-135 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 405 / 2e-135 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 403 / 2e-134 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 226 / 1e-66 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 216 / 1e-62 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038122 [exp] 749 / 0 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 744 / 0 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 454 / 3e-154 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 450 / 9e-153 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 409 / 9e-137 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 405 / 4e-135 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 410 / 4e-134 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 369 / 5e-122 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 241 / 3e-71 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10035340 [exp] 196 / 1e-54 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.006G065100.1 pacid=42768658 polypeptide=Potri.006G065100.1.p locus=Potri.006G065100 ID=Potri.006G065100.1.v4.1 annot-version=v4.1 ATGTCAGGTGGAACCCAGAAAAGTTTGAGGAAAGCACTTGGTGCCCTCAAGGATACCACCACTGTTTCATTGGCCAAAGTCAATAGTGATTACAAGGAAT TGGACGTTTCTATAGTTAAGGCCACGAATCACTATGAGCGACCTGCAAGGGAAAGACACATTAGAGCTATTTTTGCTGCCGTTTCAGCTACCAGACCTCG GGCTGATGTTGCATATTGCATCCATGCACTTGCGCGGCGTTTATCGAGGACACATAACTGGGCGGTTGCTTTGAAAACTTTAATCGTTATTCATCGTGCT TTGAGAGAAGTGGACCCCACGTTTTACGAAGAAATCATTAATTATGGAAGAACCCGAAGTCATATGCTTAACATGGCTCATTTCAAAGATGATTCCAGTC CGAATGCATGGGATTATTCCGCGTGGGTTCGCGCCTATGCCTTGTTTTTGGAGGAGAGGTTGGAATGCTTTCGCGTGTTGAAGTATGACGTTGAGATGGA TCGACCTAGGACCAAAGATCTGGACACTGTTGAAATACTGGAACAGTTGCCAGCTTTGCAACAGCTTCTTTTCCGTGTTCTTGGTTGTCAGCCACAAGGT GCAGCAGTCAATAACTTTGTCATTCAGTTGGCACTTCAATTGGTTTCTTCAGAGAGCATTAGAGTTTATCAAGCTATAACTGATGGTACTGCCAATTTGG TTGACAAGTTCTTTGAGATGACGCGCCTTGATGCTTTGAAGGCTCTGGAAATATATAGAAGGGCTTGCCAACAGGCAGAGAGACTTTCAGAATTTTACGA GATATGTAAAAGCATGGATATTGGACGTGGAGAACGGTTTATAAAGATTGAGCAGCCCCCTTCATCATTCCTACAAACCATGGAAGAGTATGTGCGAGAT GCTCCAAGGATGTCAATAGCTCGAAAGGATCAGTTTGTGGATAATAAAATTGCTGCCCCCAAGGAAATCTTAGCCATAGAGTACAAAAAGGAACCTGGGG TAGAGGAGGAATGCCCGCCATCACCACCTCCACCTGAACCAGTAAAAGTGGAAGAGCCTGTAGCTCAACCACCTGATTTGTTGGGTTTGGGCGATCCTCT TCCAGTTGCTTCAGAGCTAGATGAGAAGAATGCCCTGGCTCTTGCTATTGTTCCAGTCGCTGAACAACAAAGTACTGCTATCCCAAGTCATGCAAATGGA ACTACAGGCTGGGAACTGGCACTTGTCACAGCTCCTAGTTCAAATGAAAGTGCCGCTGCTGCTAGCAAACTGGCTGGAGGGCTCGATAAACTTACATTAG ACAGCCTCTATGATGATGCAATTAGAAGGAGCAACCAGCCTGTGAGCTACAATCCTTGGGAGCCAGCCCCAATGGCTAATCCCATGATGCAAACAGCTGT GCATGATCCTTTCTTTGCCTCCAACATGGTGGCTGCACCACATTCAGTGCAAATGGCACAAATGGCAAGCCAACAGCAAGCTTTTATGTTACAGCAGCAG CAGCAGCAGCAGCAGCAGATGATGATGATGATGGGCCAACAACAGCAACCTTCAAATCCTTTCGACAACCCTTATGGAAGCAGTGTCCACCCCTATGGCT CAGGTAGGCCGCCTGTTCAAGCATACAATCCATATTCGGGCCTTATTTAG
AA sequence Show only first row Show all	>Potri.006G065100.1 pacid=42768658 polypeptide=Potri.006G065100.1.p locus=Potri.006G065100 ID=Potri.006G065100.1.v4.1 annot-version=v4.1 MSGGTQKSLRKALGALKDTTTVSLAKVNSDYKELDVSIVKATNHYERPARERHIRAIFAAVSATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRA LREVDPTFYEEIINYGRTRSHMLNMAHFKDDSSPNAWDYSAWVRAYALFLEERLECFRVLKYDVEMDRPRTKDLDTVEILEQLPALQQLLFRVLGCQPQG AAVNNFVIQLALQLVSSESIRVYQAITDGTANLVDKFFEMTRLDALKALEIYRRACQQAERLSEFYEICKSMDIGRGERFIKIEQPPSSFLQTMEEYVRD APRMSIARKDQFVDNKIAAPKEILAIEYKKEPGVEEECPPSPPPPEPVKVEEPVAQPPDLLGLGDPLPVASELDEKNALALAIVPVAEQQSTAIPSHANG TTGWELALVTAPSSNESAAAASKLAGGLDKLTLDSLYDDAIRRSNQPVSYNPWEPAPMANPMMQTAVHDPFFASNMVAAPHSVQMAQMASQQQAFMLQQQ QQQQQQMMMMMGQQQQPSNPFDNPYGSSVHPYGSGRPPVQAYNPYSGLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.006G065100 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	1.00	0.8875
					Potri.018G123400 [exp]	2.00	0.8710
AT4G32340			Tetratricopeptide repeat (TPR)...		Potri.006G254300 [exp]	3.00	0.8661
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105100 [exp]	3.16	0.8515
AT2G40095			Alpha/beta hydrolase related p...		Potri.008G067700 [exp]	7.48	0.8651
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.002G158000 [exp]	9.79	0.8426
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	10.39	0.8513
					Potri.010G061000 [exp]	10.58	0.8247
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	11.00	0.8306
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	16.24	0.8303

Compare expression of checked genes

Potri.006G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.