Plant FIBer expression Database

Potri.006G065200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G10950 193 / 1e-58 BSD domain-containing protein (.1)
AT3G49800 125 / 2e-32 BSD domain-containing protein (.1)
AT5G65910 117 / 3e-29 BSD domain-containing protein (.1)
AT1G10720 94 / 4e-21 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G125400
[exp]
504 / 2e-180 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1)
Potri.T125207
[exp]
504 / 2e-180 AT2G10950 143 / 2e-39 BSD domain-containing protein (.1)
Potri.014G008400
[exp]
160 / 2e-44 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1)
Potri.007G006400
[exp]
152 / 4e-42 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1)
Potri.014G014200
[exp]
119 / 7e-30 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039982
[exp]
218 / 7e-68 AT2G10950 156 / 2e-44 BSD domain-containing protein (.1)
Lus10027706
[exp]
193 / 7e-59 AT2G10950 147 / 9e-42 BSD domain-containing protein (.1)
Lus10011556
[exp]
142 / 4e-38 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1)
Lus10019271
[exp]
141 / 6e-38 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G065200.1 pacid=42769038 polypeptide=Potri.006G065200.1.p locus=Potri.006G065200 ID=Potri.006G065200.1.v4.1 annot-version=v4.1
ATGTCTTGGCTTTTCAAATCACTCCAATCCAACGACCCAGGTTCACCCCCACACTCTCCTCCCCCTCCTTCAGTTAAAGACCACTTGTCGGCCATCGGTG
TTTCTATAGGTCGTCAATTACGTGGCGTTGCTAACTTCCTCGCCCCTCCACCCCCGTCCCGTCCTGAAGCAGCCAAATCACAACCGTCCGATTCTTCTCA
ATCATCACGAGCTCTCATCGGGATTCGCAACGATCTCGCCGAAATCGGTGACAGTTTAAAATATGGTCTCTCTAAACTCACTTTTAATTTCTTGCGATTT
AAAGATGATGATCATAACAACAGTAGTCAAGAAGGTGATTATGAGGATGGCGTGGCGGGGATTAATGAGGAGGTGATTGGTTTTGTTAAGGAGATTTCTC
TGAGACCTGAGTACTGGGTTGATTTTCCTTTACCACTCCAAAACGATTTTAGAATGACTGATGCTCAAAGAGAACACGCCTCAAATATTGAACGTTTTGT
TCCTAGTTTGGCACAACTTAGATATAATCTTAGGAGTGAAACGGGGGATGGCCGATTTTGGATGGTTTATTTTATATTGTTGATTCCAAGATTGAATGAA
GGTGATTTCGAGATTCTATCGACTCCCCAGATAGTTGAAACAAGAAATGTACTTCTGGAGAAGCTGCGAAACAAGAAGAATGTGAAGTTGGAAAGCTCCA
AGAATTCTATCAGTGAGACACAAGGAGAGAATACAACATCTAGAGAAGAGGTCGCCGGGATTGTATATGCTACTGAAGGCTTAAAAATTAATGATGAAGA
GAATTCTAAGCAGTTTTTAAAAGAGCAAATTGATAATAGCATTTCAATGGATAACCGGAAAAAGCTTGAAGGCAAAGAGGATGTGTCATTCAGCGATCTG
GAAGATGATTATAGTGATTCTTCAACAAGATTATCAGCTTCTAGGAAAGCACAGAGCATTAGGGCTCCTTCACCCAGTGGATCCAGCGATTGGGTCCAAC
TGAATGAAAGCTCTGACATTCTGGGTGGTCTACGTAAGGCAAGGCAGTCATTTTCTCGTGATAAAGATTCAGATGCCGAGTCCACTGACTGGCATAAAGT
TGATGAGTTTGATTAG
AA sequence
>Potri.006G065200.1 pacid=42769038 polypeptide=Potri.006G065200.1.p locus=Potri.006G065200 ID=Potri.006G065200.1.v4.1 annot-version=v4.1
MSWLFKSLQSNDPGSPPHSPPPPSVKDHLSAIGVSIGRQLRGVANFLAPPPPSRPEAAKSQPSDSSQSSRALIGIRNDLAEIGDSLKYGLSKLTFNFLRF
KDDDHNNSSQEGDYEDGVAGINEEVIGFVKEISLRPEYWVDFPLPLQNDFRMTDAQREHASNIERFVPSLAQLRYNLRSETGDGRFWMVYFILLIPRLNE
GDFEILSTPQIVETRNVLLEKLRNKKNVKLESSKNSISETQGENTTSREEVAGIVYATEGLKINDEENSKQFLKEQIDNSISMDNRKKLEGKEDVSFSDL
EDDYSDSSTRLSASRKAQSIRAPSPSGSSDWVQLNESSDILGGLRKARQSFSRDKDSDAESTDWHKVDEFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G10950 BSD domain-containing protein ... Potri.006G065200
[exp]
0 1
AT3G18650 MADS AGL103 AGAMOUS-like 103 (.1) Potri.010G181300
[exp]
4.00 0.8491
AT3G01170 Ribosomal protein L34e superfa... Potri.017G084500
[exp]
5.09 0.8332
AT5G63280 C2H2ZnF C2H2-like zinc finger protein ... Potri.015G090300
[exp]
6.70 0.8269
AT5G18200 UTP:galactose-1-phosphate urid... Potri.019G034400
[exp]
8.94 0.8147
AT3G09970 Calcineurin-like metallo-phosp... Potri.002G156200
[exp]
10.39 0.8269
AT4G19860 alpha/beta-Hydrolases superfam... Potri.015G121000
[exp]
10.95 0.8064
AT1G12450 SNARE associated Golgi protein... Potri.003G117400
[exp]
11.66 0.8043
AT1G71800 CSTF64 cleavage stimulating factor 64... Potri.002G061200
[exp]
11.87 0.8323
AT4G25180 RNA polymerase III RPC4 (.1) Potri.003G107300
[exp]
13.00 0.8126
AT2G30105 unknown protein Potri.001G280500
[exp]
15.19 0.7443

Potri.006G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.