Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25320 609 / 0 TRAF-like family protein (.1) AT2G25330 545 / 3e-179 TRAF-like family protein (.1) AT3G11910 76 / 1e-13 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 76 / 2e-13 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58250 68 / 7e-12 TRAF-like family protein (.1) AT3G20370 67 / 3e-11 TRAF-like family protein (.1) AT3G58210 66 / 5e-11 TRAF-like family protein (.1) AT3G58360 62 / 6e-10 TRAF-like family protein (.1) AT5G43560 61 / 6e-09 TRAF-like superfamily protein (.1.2) AT5G52330 58 / 2e-08 TRAF-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256400 [exp] 615 / 0 AT2G25320 2377 / 0.0 TRAF-like family protein (.1) Potri.018G025600 [exp] 607 / 0 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.014G055400 [exp] 73 / 1e-13 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.008G012600 [exp] 72 / 3e-12 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 72 / 3e-12 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G199400 [exp] 70 / 3e-12 AT3G17380 211 / 6e-66 TRAF-like family protein (.1) Potri.006G198300 [exp] 70 / 1e-11 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 69 / 1e-11 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G099600 [exp] 66 / 4e-11 AT3G17380 344 / 1e-118 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001490 [exp] 616 / 0 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10002926 [exp] 592 / 0 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10005821 [exp] 81 / 4e-16 AT2G25320 309 / 7e-96 TRAF-like family protein (.1) Lus10034130 [exp] 74 / 1e-12 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10043456 [exp] 72 / 2e-12 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 71 / 7e-12 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 66 / 2e-10 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10021218 [exp] 63 / 1e-09 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022207 [exp] 62 / 2e-09 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10034129 [exp] 57 / 2e-08 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.006G065300.1 pacid=42769897 polypeptide=Potri.006G065300.1.p locus=Potri.006G065300 ID=Potri.006G065300.1.v4.1 annot-version=v4.1 ATGAAAAACCACAGAGTAAAAACCCTTAAAACCAAAACCCCTAAACCCATTTCGTCTCCATTATCGGAAACCCCACCGGCGGCGGATTACACGGTGAATG TGGACTGTAGTGAGGACTTTCACTCCGTTTGCAAATGGGTTATCCCAGATTTCAGGAAAATAAAGTCCAGGTCTTTATATAGCAGATATTTTCAAGTTAG TGGCTATGACTTTCGTTTTTTAATGTACCCAAAAGGGGATTCTTTATCAGTACCTGGACATATCTCTCTTTACTTACAAGTTAATGACCCTTGTAGTTCT AATTGTGATTGTTATGCTTGTTACAAGATTGTCATTGTTAATGTCGTGGATGAGACTAAGTCTTTGTCTAAAGAGAGTGTTTATAGGTTTTCCAAGAACA GGAAATCTATTGGTTGGTGTGAATTTGCGGTTTCTAATACAGTTTTGGATGCTAATTCAGGGTTTTTAAAAGATGGGGTTTTAACTATTAGTGGTGAAAT TCGGGTTTTGGATGAGAAAATGGAGTTTTCGAGTGATTGTAGTGAGGGAATGTCTTATGCTTTGAATGGGAAGGTTACTTGGAGTATAAGAAATTATGGT TTGTTGAAGCAAATGGTGAAGACTCAGAAGATAATTAGTTCGGCTTTTCGAGTATGGGAGGCTTATCTTGGGGTTAATTTGTCGAAAAGCATGGTTAATG GGGCTGAGAATTTGTCATTGTTCTTGGATATTAAGGATATAGAGAAGAACCCTGTGATTGATAGGAGTTGTTGGTGTCTTTTTCGAATATCAGTGTTGAG TCAAAAGCCAGGGGTTAGTCATGTAAGTAGGGAATATTATGGGAGGTTTGGGGGAGGAGGTGATACGAGTCTTGGTTGGACTGAGTTTATGAAAATCTCT GATTTTTTTGATGAAGGATATGTAGTGGATGATAATGTGTTGGTTAGTGTATCCTTTAATGCTATTCAGGAGTCAAGTTTTTCCTTCAGGATTGAAGGCG TTTCTAGTGGTAAGTGTAAGGGGATGATTAATTGTGGCTACTTGGGTGGTAAGAGCAAGTATGGTCTGGTAAAAAGATGTGATGATTACACAGGAAAAAT CATTTGGAAGATTGAGAATTTCTCAAGGTTGAAGGATATTTTAAAGAAAAAGAAGATGAAAGGTCTGTGTGTGAAGAGCAGGAGGTTTCGGATTGGGAAT ATGGAAGTCCGCATTTTAGTTTATCCTAGAGGTCAATCTCAGAAACCAATCCACCTTTCAACGTTTCTTGAAGTTTTGGATCCAGGAAACAGTTCTGGTG ATTGGAGTTCTTTTATTGTCTATCAGTTGGCAGTTATGAATGGGAAGATGATAGAGAAGTCTGTTGTGAAACAATCTGCAGAACGATGCTCCAATGCTAC AAAAAACCATGGCTGGTCTGAATTCATGACCCTTACTAGTCTTTTTGACCAGGACTCTGGGTTTATTGGTCATGAAACTGCTGTCTTTACAGCAGAGGTT CACATATTGAAGGAGACATTCATGACAACAGAGTCGAGCGACAATGCTTGTTCAGTTACATGGAAGATGGAAAATTTTTTATCCTTCAAGGAAATAATGC TAAGCCGAAGAATATTAAGCAGATTTTTTGAAATTGGTGGCTGTAAACTTCAAATTGGGATATATCAATCATCTGCAAATATATGTGCATACTTGGGGAG TGATCCGTTGATTGACAATTTTTGGGTCAATTACAGGATTACTATAGTTAATCAAAATGACCCTGCTAAAAGTTTGTGCAAGGAGTCTTCCCTATGCACA AAGGCATATTTCAATGCCGATCTTCAATTGATGAAAGTATCAGATATGCTGGACACAGATGCTGGATTTGTTGTTCATGAGACAATTACTTTGGTTTGTG AAATCCTTGATTGCTGTCCATGGTTTGAGTTTTTTGAACCTGAGACTGGTAACATGGAAGCAGAACCAAGTGACTGCCAGTTCCTCTCTGCTGTCTGTCA AATGGACATCAACAACGAAGAGTGTAAAAAAACATTTTCTGAAGTTTCTGGAGTTTTGGGGAGCACACCTTATGAAGCTCTGCAATCTGTTATTCACTTG TTATTTAAATCTGCATCTCAGTGCCAGTGTATTCCTCGAGCAGTCAATGTTGTTCGCGCAAGGCTAGAACTTTTAGGAGCTGAGATATCACCCGATCTGT TGGATCTCCTGGGCAGCACTATGAATAGTCAGCATGAGATTGCTGAAGCAATGTTGAGAGAAATTGATAGTGTCTTTGCACTTGATGAAAAATGCAAACT GCTGGATGTGACTCCATGTCCATTATCTAAAGAAGTGCCCTATTTAGATAGTGGAACCAGACTTGCAGCCAACAGCTCACATAGGGAAGATGAATCAGGT AGTCATGTACATCATCATTTTTCTGATATCTTTATCTTGATTGATATGCTGTCTATACCTTCCCTCACCATTGAAGCTTCTGGGGTTTTTGAGAGAGGTG TTGCTCATGGATACATTGATAACCAAGTAGTGGCCTTGGTCTTGGAAAAACATGCTCAAAGATTTAGTGCAAATTCAACAGCCAGGGAGAAAAATGCAGA GTCTTTGTTTTCTGAAGAATTTTTCACCCCAGTTCTTGCTCTTGCAGAAACATTGTCCCTCTCTATAAACTCTCAAGTTCATAATTTTGTGAAAATGTTT TATGTTACACTATTTGAAGTGTTTTCTGGTGAGAGTTATCACACAAGAATGCTGAGAGGGCTAGTTGACCTTGCCACAAGCCCTGTGGAGAATTCTTTGG AGATGAATCTGGATATGTTGATCTTCTTGGTTCACAGGGAACATGGATTTGCTAGACCAGTTCTAAAAATGGTGGGGGATGCTGCTAAGCATGACAACGC TGATCATTCTGCCATCAGTCATCGTCTGCGTTGTTTAGAGGAGAAAATTATTCATATTGGCAAAGAAAAGCGAGCTGAACTTTCAAATATGTCTAGTGAG AAGGCTACTTTGTTAGAAAGGCTGACTGAAACTGAGGCTGCTCTCCTTCATTATAAGTCTGAAATGGAGCTTGAAAGGGACCACTTTACTTGTGAAAAGA CAGAACTCTGTGCACATATACAAGATATTGAGACTCAACTTGAACAGTTGTGCTCCAAGCATAAGGATCATGTTGCAAAGCACTGCATGGAGAAAAGGGA TTACCAAGATCATCTTTATCATGTGGAAACACAGTTGTCACATCTAAAGTCCTTAAAACACCAGGAATTGAAGAAACTACTTAAAGAGAAAGAAGTTCTT GCTGAAAGATTGAGACATGCAGAAGCTAATCTAGAAGTTTCTGATAGAAAACTGAAAAAATATGCTTCAAAAGTTGTGATTCAAGAGGAGGAACAACAGA CACAACTGGATGAGATTTGGCAGTTGAAACAAAAAGTTGAACAAATTGAAATAGTGAAACAGGACAAGGAAGAGGAGGTTGCTCATTATAGAGCATGCAC TTACGATTTGGAAGCAAAATTGAATGACTGCCAGAAACATATCCAATTTCTTGAAAATGCACATCGGGAGGAGATGGAACAGCATGCTCCTCTATATGGT GTAGGCTTGGAATCTCTCTCAATGGAATCATTGGAGAATTTGTTGCGCATCCATGAAGATGGGATAAAAAACATCCATGCCCTTCAACATCAACTAAGAA ATCGGAGTGGTGATCTTGTCTCAAGTGCAAATCCTCTTCAACTCAGACAGTTTGCAACCTACAGCACAATATCCTATTGCTGA
AA sequence Show only first row Show all	>Potri.006G065300.1 pacid=42769897 polypeptide=Potri.006G065300.1.p locus=Potri.006G065300 ID=Potri.006G065300.1.v4.1 annot-version=v4.1 MKNHRVKTLKTKTPKPISSPLSETPPAADYTVNVDCSEDFHSVCKWVIPDFRKIKSRSLYSRYFQVSGYDFRFLMYPKGDSLSVPGHISLYLQVNDPCSS NCDCYACYKIVIVNVVDETKSLSKESVYRFSKNRKSIGWCEFAVSNTVLDANSGFLKDGVLTISGEIRVLDEKMEFSSDCSEGMSYALNGKVTWSIRNYG LLKQMVKTQKIISSAFRVWEAYLGVNLSKSMVNGAENLSLFLDIKDIEKNPVIDRSCWCLFRISVLSQKPGVSHVSREYYGRFGGGGDTSLGWTEFMKIS DFFDEGYVVDDNVLVSVSFNAIQESSFSFRIEGVSSGKCKGMINCGYLGGKSKYGLVKRCDDYTGKIIWKIENFSRLKDILKKKKMKGLCVKSRRFRIGN MEVRILVYPRGQSQKPIHLSTFLEVLDPGNSSGDWSSFIVYQLAVMNGKMIEKSVVKQSAERCSNATKNHGWSEFMTLTSLFDQDSGFIGHETAVFTAEV HILKETFMTTESSDNACSVTWKMENFLSFKEIMLSRRILSRFFEIGGCKLQIGIYQSSANICAYLGSDPLIDNFWVNYRITIVNQNDPAKSLCKESSLCT KAYFNADLQLMKVSDMLDTDAGFVVHETITLVCEILDCCPWFEFFEPETGNMEAEPSDCQFLSAVCQMDINNEECKKTFSEVSGVLGSTPYEALQSVIHL LFKSASQCQCIPRAVNVVRARLELLGAEISPDLLDLLGSTMNSQHEIAEAMLREIDSVFALDEKCKLLDVTPCPLSKEVPYLDSGTRLAANSSHREDESG SHVHHHFSDIFILIDMLSIPSLTIEASGVFERGVAHGYIDNQVVALVLEKHAQRFSANSTAREKNAESLFSEEFFTPVLALAETLSLSINSQVHNFVKMF YVTLFEVFSGESYHTRMLRGLVDLATSPVENSLEMNLDMLIFLVHREHGFARPVLKMVGDAAKHDNADHSAISHRLRCLEEKIIHIGKEKRAELSNMSSE KATLLERLTETEAALLHYKSEMELERDHFTCEKTELCAHIQDIETQLEQLCSKHKDHVAKHCMEKRDYQDHLYHVETQLSHLKSLKHQELKKLLKEKEVL AERLRHAEANLEVSDRKLKKYASKVVIQEEEQQTQLDEIWQLKQKVEQIEIVKQDKEEEVAHYRACTYDLEAKLNDCQKHIQFLENAHREEMEQHAPLYG VGLESLSMESLENLLRIHEDGIKNIHALQHQLRNRSGDLVSSANPLQLRQFATYSTISYC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25320			TRAF-like family protein (.1)		Potri.006G065300 [exp]	0	1
AT1G42960			unknown protein		Potri.005G254200 [exp]	10.81	0.8663
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Potri.002G031800 [exp]	13.30	0.8568
AT2G04790			unknown protein		Potri.014G162700 [exp]	19.59	0.8625
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.002G195200 [exp]	26.98	0.8536	CLPP5.2
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	36.24	0.7543
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.012G040900 [exp]	36.82	0.8412
AT3G63088		RTFL14, DVL14	DEVIL 14, ROTUNDIFOLIA like 14...		Potri.014G138900 [exp]	37.22	0.8390
AT1G21500			unknown protein		Potri.013G128700 [exp]	39.68	0.8447
AT1G18335			Acyl-CoA N-acyltransferases (N...		Potri.012G041400 [exp]	41.71	0.7741
AT3G17668		ENA	ENHANCER OF ATNSI ACTIVITY, Dn...		Potri.014G179800 [exp]	43.93	0.8425

Compare expression of checked genes

Potri.006G065300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.