Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35430 635 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G126100 [exp] 1377 / 0 AT5G35430 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G126780 [exp] 170 / 1e-43 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 167 / 1e-42 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039983 [exp] 972 / 0 AT5G35430 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027703 [exp] 971 / 0 AT5G35430 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.006G065600.1 pacid=42769709 polypeptide=Potri.006G065600.1.p locus=Potri.006G065600 ID=Potri.006G065600.1.v4.1 annot-version=v4.1 ATGGACGCACGAGATTCGACATCGAACCGAGACGTCTCATCGAGCGGCGGCAGCGGCACCACCACCGGCGGTGGAGGAGGAGAAGAGGACCCTATCCTTT CCGTCACTGCCGCGCTTGCCAAAGACGCTTGGTTACACTTTAACTCTCGCCGGTTCAATGAGTGCCTCGAGGTTTTGTATCAGCTAAAGCAGAAAAAGGA AGACGATCCAAAGGTACTTCATAATATTGCTATTGCGGAGTATTGTAGAGATGGTTATCCAGATCCGAAGAAGTTGCTTGAAGTGCTTAATAACATTGAG AGGAAAAGCAAAGAGCTTGCTCACACTTCAGGAGAGCAGGTGGAGACTGTTAGCAATCTTGGGAATAAAGGTATTTCAGGGTCTAAAGGAAGTGGTGCAA TGACACTCCAAGCATCGGCGACAAACAGCACATCTGTTGTTTACATGGATGAATTTGATCCTACAGTAGCAAGGCTAAATATTGCGATTATTTGGTATCA TCTTCACGAATATTCAAAGGCATTATCAGTTCTAGAACCTTTGTATCACAATATTGAACCTATAGAGGAGAGAACTGCTCTTCATGTTTGCCTTCTGTTG CTAGATGTTGCTCTTGCCTGCCAGGATGCATCTAAATCTGCTGATGTTTTATTATATCTAGAAAAAGCTTTTGGCTTTGGTTGTGTGGGTCAAAGTGAGA ATGGGAACACAGCACAGCAACAATCTGCAAGTCTTGTTGCAAAATCTCTGTCTGTTCCTAGCAGTTCATCAGGGATGGATGCTAATTCAGATTTAGCTTC TAGTGAGAATGCTTTGGAAAAGTCTTTATCGAGAACTCTATCTTTATCAGATGAGACACTTGAGTATGAATCGATGTTCTCACTAGACATAAGTGGGCAA GACTTAGCAAGGCCTGCGGGTCTTTCATTTTCAACTGATCTTTCAAGGACCCCGATTGATAGGTCCTTTTCTCCTTCCGAAATGAAGCTTAAGTTGCATC TTTACAAGGTTCAATTTCTACTTCTCACCAGGAATTTGAAACAAGCAAAGCGTGAAGTCAAGCTTGCTATCAACATTGCACGTGTAAGGGACTCGCCAAT GGCTCTCCTCTTGAAATCTCAGCTTGAATATGCTCGTAGTAACCACCGTAAGGCCATCAAGTTGTTAATGGCAGCAAGTAATCGGACGGAGATGGGGATT TCTAGCATGTTCAACAACCTTGGGTGCATCTACTATCAGCTTGGGAAATACCATACAGCATCTGTGCTCTTTTCCAAGGCACTGAGTAGTAGTTCATCTC TTCAGAAGGACAAGCCGTGGAAGTTGTTAACTTTCTTACAGGACAAATCTCTCCTCATTGTATATAATTGTGGAGTGCAGCACTTGGCTTGTGGGAAACC CTTACTGGCTGCTCGCTGTTTTGAAAAGGCAAGTTTAGTTTTCTACAACCGGCCTTTATTGTGGCTCCGACTTGCTGAATGCTGTCTGGTGGCTTTGGAG AGGGGTCTTCTAAAAGCTAGTCGAGTTCTATCGGACAAGTCAGATGTTACAGTTCATGTTTTTGGAAAGGGAAAGTGGAGGCATCTTGCAATTGAAAATG GGATTTCAAGAAACGGGTATGTGGATTCTGCTGAAAAGGAAGATATGTTTTTGGGTAGTGACGGCCAACTGAAACTCTCTGTTCCCCTTGCTCGGCAGTG TCTCCTCAATGCTCTGCATTTGCTGGATTACTCTGGATTAAATCATTTGAAGCCTGGCTTGCCTTCTAATTTATCCTTGGATGAAAATGAAATGAGCGAA GCAGGATCTATGAAGAGTTCAAACCACAAGAATTTAACTGGCTCTGATTCCAAAACATCAACTGGAGGCCTGGGTCAGGTTAATGCAAATGGGGATGCAA AAGAACAGAAGGGTGGGACAAGTCAGGAGAGCATGCAGAACTCTATCTCTTTCCATGAAGATATTCGCAGGAGAGAAAATCAGTTGCTCAAGCAAGCACT TCTCGCTAACTTGGCATATGTAGAGTTGGAATTGGAAAATCCTGAGAAGGCCTTGTCAACTGCAAGGTCTCTTCTGGAACTTCCAGTATGTTCGAGAATT TATATTTTTCTGGGTCATTTGTATGCAGCTGAGGCCCTCTGCATGCTGAACAAGCCCAAGGAAGCTGCTGAGCATTTGTCAATTTATTTGTCCGGAGGAA ATAATGTGGAGTTGCCTTTTAGCCAGGAAGACTTCGAGCAATGGAGAGTGGAAAAAGCTTTTGATTATGAAGAGATGAATGGAGGATCAGTTGCTACGAA GAATTCTTCCCCAGAAGAATCACAAGGTATTGTGTTCCTCAATCCAGAAGAGGCACGTGGAACCCTTTACACAAATTTTGCAGTCCTGTGTGCAGCACAG GGTGATCTTGAGCGGGCCCACCATTTTGTGACACAAGCATTATCCCTTGTGCCTAATCATCCACAAGCCACTCTGACGGCAGTTTATGTTGATCTTATGC TCTGTAACTCACAAGCAGCGATCGGCAAGTTAAAACAATGTAGCCGAGTGAGATTCCTCCCGAGCGGTGTACAATTGAGTAAGTGTTGA
AA sequence Show only first row Show all	>Potri.006G065600.1 pacid=42769709 polypeptide=Potri.006G065600.1.p locus=Potri.006G065600 ID=Potri.006G065600.1.v4.1 annot-version=v4.1 MDARDSTSNRDVSSSGGSGTTTGGGGGEEDPILSVTAALAKDAWLHFNSRRFNECLEVLYQLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEVLNNIE RKSKELAHTSGEQVETVSNLGNKGISGSKGSGAMTLQASATNSTSVVYMDEFDPTVARLNIAIIWYHLHEYSKALSVLEPLYHNIEPIEERTALHVCLLL LDVALACQDASKSADVLLYLEKAFGFGCVGQSENGNTAQQQSASLVAKSLSVPSSSSGMDANSDLASSENALEKSLSRTLSLSDETLEYESMFSLDISGQ DLARPAGLSFSTDLSRTPIDRSFSPSEMKLKLHLYKVQFLLLTRNLKQAKREVKLAINIARVRDSPMALLLKSQLEYARSNHRKAIKLLMAASNRTEMGI SSMFNNLGCIYYQLGKYHTASVLFSKALSSSSSLQKDKPWKLLTFLQDKSLLIVYNCGVQHLACGKPLLAARCFEKASLVFYNRPLLWLRLAECCLVALE RGLLKASRVLSDKSDVTVHVFGKGKWRHLAIENGISRNGYVDSAEKEDMFLGSDGQLKLSVPLARQCLLNALHLLDYSGLNHLKPGLPSNLSLDENEMSE AGSMKSSNHKNLTGSDSKTSTGGLGQVNANGDAKEQKGGTSQESMQNSISFHEDIRRRENQLLKQALLANLAYVELELENPEKALSTARSLLELPVCSRI YIFLGHLYAAEALCMLNKPKEAAEHLSIYLSGGNNVELPFSQEDFEQWRVEKAFDYEEMNGGSVATKNSSPEESQGIVFLNPEEARGTLYTNFAVLCAAQ GDLERAHHFVTQALSLVPNHPQATLTAVYVDLMLCNSQAAIGKLKQCSRVRFLPSGVQLSKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.006G065600 [exp]	0	1
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	1.00	0.7342
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	1.41	0.7279
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G105600 [exp]	7.34	0.6404
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.006G241000 [exp]	9.16	0.6404
AT3G57890			Tubulin binding cofactor C dom...		Potri.016G049000 [exp]	14.07	0.6042
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	16.97	0.5790
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	21.97	0.5950
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	26.15	0.5515
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.014G052600 [exp]	26.45	0.6062
AT5G26720			unknown protein		Potri.013G000200 [exp]	29.10	0.5714

Compare expression of checked genes

Potri.006G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.