Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53270 293 / 4e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126760 [exp] 260 / 4e-88 AT3G53270 157 / 2e-48 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Potri.004G126720 [exp] 248 / 2e-83 AT3G53270 174 / 3e-55 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001478 [exp] 296 / 3e-99 AT3G53270 294 / 5e-99 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Lus10008478 [exp] 264 / 5e-87 AT3G53270 273 / 4e-91 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein Lus10032295 [exp] 139 / 2e-37 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10024665 [exp] 95 / 1e-23 AT3G53270 87 / 3e-21 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09808 [poplar] [flax] SNAPc_SNAP43 Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Representative CDS sequence Show only first row Show all	>Potri.006G065800.1 pacid=42769111 polypeptide=Potri.006G065800.1.p locus=Potri.006G065800 ID=Potri.006G065800.1.v4.1 annot-version=v4.1 ATGGATCTGTCTCCATTCAAGTTGGACATTGATGAGCTTATAAATGAGTTTGTTGAGGGTGAGTTTACAACTTTGGCTGATATGAAAAGAGTATGGCTTT CCAGGAAGTTTACCTACATCTTTGAGGCTAGTCCTCCTACCAAATTGGCCTTCTTTATGCAGTCGTTGTATGCTCATACAATTGGTCACATGATTAGCAC TTCTTCTTTATCACAAAGGCTAGGAGGCCTGTATTGCCTTTACTGTCTTTATGAGACTCAACCATTCAAGCCTCCTTTCAAAATCTACTTCTCTCTTGGA GAGTTGAAGAAACTCAAGAACCTTGTTATAAATGCAAAAGAACATGGAATAAAAGTAGTACCTGCTTTGGTCAAAAGGATGCTAGAAAAGAACATGTTTC TCTTTGGGTTTGTGGACTTACATGAAGGTTCTGTTAGTGAGACAGTGAACCAACTCACAGAATTGCAAGATGCTCGTGTGCAAGTTGCATATAAGAAGTT ATTTGATGATACTCGGATTGAGCAGTTCCTCCATATGGACATGGGTATGGAATTTGATTTAGAGATGCTCAAGAAAATGTCAACAGAATATGCAGAGGCG AAGAAACATGCCATCAGAGAAGCAAACAAGGCAGTAGATGTCCAAAACATACAGCATATATCAGATGATAGGGAATTTATTGGAGATGAAGTTGAGAGGA TCACAGAGAACTGGAATGTCCAAAGGCAAGTGTTTTATCAGCAAACAGGACTGAATCAACGTCATGCTCAAAAAGATGAGCAACAACAGCAACCACAACA CAAAAAACATGAACAGCAAGATGATGATTTTGGTGATGAATTTAGTCATCAACTGGAACTGCAACTAATTGAAGAAGAACAGCTACAACAAAAAGAAGAG GATGATGAATCTAATCATGAATTGGAGCTGTAA
AA sequence Show only first row Show all	>Potri.006G065800.1 pacid=42769111 polypeptide=Potri.006G065800.1.p locus=Potri.006G065800 ID=Potri.006G065800.1.v4.1 annot-version=v4.1 MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHTIGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLG ELKKLKNLVINAKEHGIKVVPALVKRMLEKNMFLFGFVDLHEGSVSETVNQLTELQDARVQVAYKKLFDDTRIEQFLHMDMGMEFDLEMLKKMSTEYAEA KKHAIREANKAVDVQNIQHISDDREFIGDEVERITENWNVQRQVFYQQTGLNQRHAQKDEQQQQPQHKKHEQQDDDFGDEFSHQLELQLIEEEQLQQKEE DDESNHELEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53270			Small nuclear RNA activating c...		Potri.006G065800 [exp]	0	1
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	3.87	0.7978
AT3G50940			P-loop containing nucleoside t...		Potri.008G177200 [exp]	6.32	0.7841
AT5G62865			unknown protein		Potri.015G073800 [exp]	7.68	0.7996
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009900 [exp]	7.74	0.7380
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.001G026100 [exp]	9.16	0.7709
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	17.20	0.7694
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.011G044100 [exp]	18.16	0.7615
					Potri.008G084200 [exp]	22.44	0.7550
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.001G460400 [exp]	25.92	0.7406
AT5G23750			Remorin family protein (.1.2)		Potri.015G143600 [exp]	26.98	0.7696

Compare expression of checked genes

Potri.006G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.