Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 127 / 3e-35 unknown protein AT5G02510 65 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 352 / 8e-123 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 102 / 2e-26 AT1G80040 130 / 2e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039988 [exp] 275 / 2e-92 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 270 / 5e-90 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 258 / 2e-85 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 256 / 7e-85 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10024410 [exp] 107 / 1e-27 AT5G02510 149 / 8e-45 unknown protein Lus10025332 [exp] 107 / 2e-27 AT5G02510 152 / 4e-46 unknown protein Lus10014293 [exp] 89 / 6e-21 AT1G80040 129 / 1e-36 unknown protein Lus10026000 [exp] 86 / 1e-19 AT1G80040 121 / 1e-33 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF02845 [poplar] [flax] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Potri.006G066000.1 pacid=42768923 polypeptide=Potri.006G066000.1.p locus=Potri.006G066000 ID=Potri.006G066000.1.v4.1 annot-version=v4.1 ATGTCTGCAATAGTGTGCGGGAAGAGATCTTTCTTTGAAGAATTGACAGTTACTAGCCCGCCTGTGTCAAAAAGAATCCGTTGTTCTTCTTCTTCTCCTG TTCGTTTCTCTCCTCCCAGATCGAATACCATTGCTTCCAACCCGGCCTCCTTTAATTTCTCTTCTTCTTCTTCCTCTTCTTCGGCTTTTGTCGAACAGCT CGCCGCCATTTTCCCTGATATGGACAAGCAGCTTCTTGAGAAAGCGCTTGAAGAATGTGGCGACGATTTGGATTTAGCTATCAGAAGTTTGAATGAGCTT CGTTTAGCATCTGTTGAAAATTTCAGCGCAGCTGCAGTTAAGTCTGATGTAATGGACAAGGCTAATGTTCCACCACAAGGGTTGGCACCGACAGATGCTG AGGCTCCTACTGAAGATCCATCAGCATCAGCACTCCTATCAATGGATGGTATGGAGTGGGTAGAGCTCTTTGTTAGAGAAATGATGAGTGCCTCCAATAT TGATGATGCCAGAGCACGTGCTTCAAGAGCACTAGAAGCTCTTGAGAAGTCCATTTGTACGCGTGCAGGAGCAGAGGCAGCCAAAAGCTTTCACCAGGAA AACATGATGTTGAAGGAACAAATGCAAGCATTGATTCAGGAAAATACAATTCTCAAGCGGGCTGTATCTATTCAGCATGAGCGTCAAAAAGAGTTTGAAG AAAGTAGCCAGGAGTTGCAGCAGCTGAAGCAATTGGTGTCCCAATACCAGGACCAGTTGAGAACCTTGGAGGTAAACAACTATGCATTGACGTTGCATCT GAAGCAGGCTCAACAAAGCAGCTCCATCCCAGGACGTTTCCACCCTGATGTCTTCTAA
AA sequence Show only first row Show all	>Potri.006G066000.1 pacid=42768923 polypeptide=Potri.006G066000.1.p locus=Potri.006G066000 ID=Potri.006G066000.1.v4.1 annot-version=v4.1 MSAIVCGKRSFFEELTVTSPPVSKRIRCSSSSPVRFSPPRSNTIASNPASFNFSSSSSSSSAFVEQLAAIFPDMDKQLLEKALEECGDDLDLAIRSLNEL RLASVENFSAAAVKSDVMDKANVPPQGLAPTDAEAPTEDPSASALLSMDGMEWVELFVREMMSASNIDDARARASRALEALEKSICTRAGAEAAKSFHQE NMMLKEQMQALIQENTILKRAVSIQHERQKEFEESSQELQQLKQLVSQYQDQLRTLEVNNYALTLHLKQAQQSSSIPGRFHPDVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G32440			Ubiquitin system component Cue...		Potri.006G066000 [exp]	0	1
AT4G10810			unknown protein		Potri.003G143800 [exp]	40.39	0.5461
AT3G19950			RING/U-box superfamily protein...		Potri.005G090500 [exp]	45.71	0.4914
AT3G07580			unknown protein		Potri.014G172600 [exp]	46.47	0.5172
AT3G09590			CAP (Cysteine-rich secretory p...		Potri.016G082000 [exp]	47.47	0.5196
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.011G119700 [exp]	48.74	0.4867
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	54.66	0.5226
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.014G042000 [exp]	145.32	0.4494
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.018G101700 [exp]	177.31	0.4300	GER1.3
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.010G227700 [exp]	177.91	0.4378
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.006G142000 [exp]	216.11	0.4218

Compare expression of checked genes

Potri.006G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.