Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 504 / 2e-177 Protein kinase superfamily protein (.1) AT3G01300 502 / 2e-176 Protein kinase superfamily protein (.1) AT3G28690 491 / 1e-173 Protein kinase superfamily protein (.1.2.3) AT5G01020 445 / 3e-155 Protein kinase superfamily protein (.1) AT2G28930 442 / 6e-154 APK1B protein kinase 1B (.1.2.3) AT5G02290 439 / 5e-153 NAK Protein kinase superfamily protein (.1.2) AT1G07570 436 / 9e-152 APK1A Protein kinase superfamily protein (.1.2.3) AT2G39660 417 / 1e-144 BIK1 botrytis-induced kinase1 (.1) AT2G02800 412 / 4e-142 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 410 / 1e-141 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127300 [exp] 835 / 0 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 510 / 1e-179 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 507 / 2e-178 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 498 / 3e-175 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 498 / 7e-175 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 495 / 6e-174 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240400 [exp] 451 / 1e-157 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 449 / 4e-157 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G143200 [exp] 446 / 2e-155 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006643 [exp] 717 / 0 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 716 / 0 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10005255 [exp] 507 / 3e-178 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 507 / 3e-178 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 486 / 4e-170 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10010835 [exp] 449 / 4e-157 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 448 / 4e-157 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 449 / 6e-157 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 435 / 2e-150 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10000954 [exp] 429 / 3e-149 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G066100.5 pacid=42767489 polypeptide=Potri.006G066100.5.p locus=Potri.006G066100 ID=Potri.006G066100.5.v4.1 annot-version=v4.1 ATGGATAGCAAGTGTGGTTGCTGGGCTGTCTTAAAACGTGGAGTTAGAGGTTCTTGCAAGTCCTCTGCCTCTAGAGATTCTGCTAACGCGATCCCTCGTA CTAGTCTTGTTTACGATGCAGCTACTGAAACAAGATACCTAAATGCAAGCAATCGAGAGTTATGTGCTCATAATGAAGCACAACTATCTTCTGATAATCC TGATCCACAAGATAAGAAATCTCCATGCCAGTTGCTGCAGTTTACCTTTCAAGAACTAAAATCATCAACGGGGAATTTTAGGCCTGATAGCATTCTTGGA GAGGGCGGATTTGGATATGTGTTTAAAGGATGGATAGAGGAAAATGGAACAGCACCAGCAAAACCTGGGTCGGGAATCACAGTCGCGGTGAAGAGCTTAA AGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCACCATCCTAATCTCGTTAAGCTTATTGGTTACTGCAT CGAGGATGATCAACGGCTTCTTGTTTATGAATTTATGACGCGAGGGAGTCTTGAAAATCATCTTTTTAGAAGGACAATACCTCTTCCATGGTCCAACAGG ATTAAGATTGCACTTGGGGCAGCAAAAGGATTGGCCTTTCTCCATGGTGGCCCTGAACCAGTTATTTACAGAGATTTTAAGACGTCAAACATTTTGCTTG ACTCGGAATATAATGCTAAGCTTTCAGATTTTGGTCTAGCAAAAGCTGGGCCTCAAGGGGACAAAACTCATGTTTCTACAAGGGTTGTTGGGACATACGG CTATGCTGCTCCAGAGTATGTGATGACAGGACACCTGACATCTAAGAGTGATGTTTACAGCTTCGGAGTTGTGCTGCTTGAGATTTTGACAGGCAGAAGA TCAATGGACAAGAAGCGACCTAGTGGTGAACAGAATCTAGTTGCATGGGCACGACCTTATTTAGCTGACAAGAGAAAGATGTACCAGCTAGTGGATCCCA GGTTGGAGCTGAATTACTCCCTTAAAGCGGTCCAGAAAGTTTCTCAATTGGCTTACAGCTGCCTCAGTAGGGATTCAAAGTCCCGTCCTACAATGGATGA AGTTGTGAAAGTTCTCACTCCATTGCAAGATCTAAACGACCTTGCCATTTTATCTTATCACTCTCGCTTGTCTCAACAAGGGAAGCGCAAGAAGAAAAGT GAAGGAGCGCAGCAGCACGCAAATGTATCTTCCAAAAGCATCAGAGATTCTCCCTTGAATACTGGCAAGCAGCGTTATAGATGA
AA sequence Show only first row Show all	>Potri.006G066100.5 pacid=42767489 polypeptide=Potri.006G066100.5.p locus=Potri.006G066100 ID=Potri.006G066100.5.v4.1 annot-version=v4.1 MDSKCGCWAVLKRGVRGSCKSSASRDSANAIPRTSLVYDAATETRYLNASNRELCAHNEAQLSSDNPDPQDKKSPCQLLQFTFQELKSSTGNFRPDSILG EGGFGYVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNR IKIALGAAKGLAFLHGGPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEILTGRR SMDKKRPSGEQNLVAWARPYLADKRKMYQLVDPRLELNYSLKAVQKVSQLAYSCLSRDSKSRPTMDEVVKVLTPLQDLNDLAILSYHSRLSQQGKRKKKS EGAQQHANVSSKSIRDSPLNTGKQRYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15080			Protein kinase superfamily pro...		Potri.006G066100 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	2.82	0.8539	PIN1,PIN1.3
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	3.31	0.8603
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	7.34	0.8493
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	7.48	0.8431
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	8.48	0.8155
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.007G110700 [exp]	10.95	0.8296
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	15.87	0.8314	Pt-HSFB4.2
AT4G09890			Protein of unknown function (D...		Potri.005G195800 [exp]	17.74	0.7996
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.010G186000 [exp]	18.97	0.7381
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	20.78	0.8335	PtrAUX6,Pt-LAX5.1

Compare expression of checked genes

Potri.006G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.