Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15880 1689 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT1G80490 1608 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1607 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 1332 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1295 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 250 / 3e-70 transducin family protein / WD-40 repeat family protein (.1) AT2G43770 59 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 54 / 2e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 55 / 3e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G08560 55 / 3e-07 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128000 [exp] 2041 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.003G030000 [exp] 1659 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1607 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.013G081300 [exp] 1415 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1357 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1336 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.006G257900 [exp] 1328 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1324 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 1094 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043258 [exp] 1909 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10011481 [exp] 1624 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1614 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10023119 [exp] 1569 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10029876 [exp] 1325 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1323 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 1174 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 1127 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 972 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001924 [exp] 893 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G066800.3 pacid=42767673 polypeptide=Potri.006G066800.3.p locus=Potri.006G066800 ID=Potri.006G066800.3.v4.1 annot-version=v4.1 ATGTCTTCGCTTAGCCGAGAGCTTGTGTTTCTCATACTTCAATTTCTCGAGGAGGAGAAATTCAAGGAAACTGTTCACAGACTGGAGCAAGAGTCAGGGT TTTACTTTAACATGAGGTATTTTGAGGAAATGGTGACAAATGGAGAGTGGGATGAAGTGGAGAAGTATTTGTCAGGATTTACGAAAGTTGATGATAATAG ATATTCGATGAAGATTTTCTTCGAGATTAGGAAGCAAAAGTACCTTGAAGCTTTGGACAAGCGAGATCGTGCGAAGGCAGTGGAAATTTTAGTGAAGGAC TTGAAAGTATTTGCAGCGTTTAATGAAGAGCTTTTTAAAGAAATTACGCAGTTACTGACGCTGGAAAACTTTAGAGATAATGAACAGCTATCCAAATATG GAGATACCAAGTCTGCTAGGGGTATAATGCTTGGTGAACTCAAAAAGTTGATAGAGGCTAACCCTCTTTTCCGTGACAAGCTTCAGTTTCCTACTTTGAA GAATTCTAGATTGCGGACTTTAATTAATCAAAGTTTAAATTGGCAACATCAGCTTTGTAAGACTCCAAGGTCTAATCCTGATATAAAGACTTTATTTGTT GACCACAGTTGTGGACAACCAAATGGCGCACGGGCCCCATCCCCTGTCACTAATTCCTTAATGGATGCTGTGCCTAAGGCAGGGGGTTTTCCTCCAATAA CTGGTCATGGACCATTTCAGCCCACGCCTACTATTCCACCTTCTCTTGCAGGATGGATGGCGAATCCATCTACTGTCCCTCACCCATCTGCTTCTGCTGG GCCCATGGGCTTGGCTGCTCCTAATAATGCAGTAGCACTCTTAAAGCGTCCTAGGAGTCCCCCTACCAATAACCCAGCTATTGACTATCAAACAGCAGAC TCTGAACATGTGTTGAAGAGGTCAAGACCATTTGGATTATCAGATGAGGTCAATAATCTTCCAGTTAACATTCTGCCTATTGCTTATCCGAGTCAGAACC ACGGCCAAAGCTCTTACTCTTCTGATGACTTGCCCAAGAATCCTGTCATGACTTTAGCTCAAGGTTCTGCTGTCAAGAGTATGGATTTCCATCCACTCCA ACAAATTCTTCTTCTTGTTGGAACAAGCATGGGTGATGTCATGGTATGGGAGTTGGGCAGCAGAGAAAGGATTGGTTGGAAGAATTTCAAGGTTTGGGAC CATAACTCAAGGGCTCTGCAGGCGTCTCTGTCCAGTGATTATACAGCATCGGTTAACCGAGTGGCATGGAGTCCCGATGGAACTTTATTTGGTGTTGCAT ACTCCAAGCACATTGTGCATGTATACTCCTATCATGGTGGTGATGACATACGAAATCACCTTCAGATTGATGCTCATAATGGGAGTGTCAATGATCTTGC TTTCTCTTACCCAAACAAACAACTTGCGATCGTCACTTGTGGCGATGACAGGACCATCAGGGTTTGGGATGCGGTTGCGGGGACTAGACTGTTCAATTTT CTAGGTCATGAGGCACCAGTATATTCTGTGTGCCCACATCACAAGGAAAATATTCAGTTTATCTTTTCAACGGCAGCTGATGGAAAGATAAAGGCATGGT TGTATGATAACATGGGTTCAAGAGTTGACTATGATGCACCAGGGAATTCGTCTACCACAATGGCATACAGTGCTGATGGAACTAGGTTATTCTCATGTGG GACCAACAAAGAAGGAGAATCACACTTGGTGGAGTGGAATGAAAGCGAAGGAGCTGTGAAGCGTACCTATAATGGTCTTGCAAAGCGTTCTGTTGGTGCT GTGAAGTTTGATACCACTAAGAATCGATTCTTGGCGGCTATAGATGAGTTCATGATCAAGTTTTGGGATATGGATAACGTCAACCTATTAACAAGTATTG ATGCAGAGGGTGGATTGCCGGCTTCGCCTTGTATTAGATTTAACAAGGAAGGAACGCTATTAGCTGTCTCAACAAATGACAATAGCATCAAAATTCTAGC AAATTCAGATGGGATCAGGCTGCTCCGAACAGTGGAGAATCGTACATTTGATGCTTCTAGAGCTGCTTCTGCTTCTGTTGTGAAGCCCCCCCCAATAGGC AATTTTTCTCCTGCCAATGCCCCAGTTGGAACCAGTGGCGATGATCAAGCTGCTCTTGCAGCACCCATGGTTGGAATGTTTCTACAGAATAGTGACAGTC GAAGTTTAGTTGATGTGAAGCCTAAAATTCAAGATGAATCAGTTGAGAAATCTAGGATCTGGAAATTAACAGAAATAAATGAACCATCACAGTGCCGCTC CCTGAGGCTCCCTGATAGCTTGACTTCCATGAGGGTGTCTAGATTAATTTATACAAATTCAGGAGTTGCCATATTGGCATTAGCGTCTAATGCAGTGCAC AAGCTTTGGAAGTGGCAGCGAAATGATCGAAATCCGTCTGGGAAGGCCAATGCCAGTGTACCACCTCAATTATGGCAGCCTTCCAGTGGAATTTTGATGA CTAATGATATTAGCGACACAAACCCTGAAGATGCTGTTCCATGCTTTGCACTTTCAAAGAATGATTCTTATGTCATGTCTGCTTCAGGAGGGAAAATTTC TCTTTTCAATATGATGACATTTAAGACAATGACAACATTCATGGCCCCACCACCAGCTGCAACGTTTTTAGCATTTCACCCTCAGGACAACAATATCATA GCTATTGGCATGGAGGACTCTTCTATACAAATTTATAACGTTAGGGTTGATGAGGTCAAAACAAAGTTAAAAGGTCATCAGAAAAGAATTACAGGCCTTG CCTTCTCTCACTCTCTAAATGTCCTGGTGTCTTCTGGAGCTGACTCTCAGTTGTGTGTTTGGAGCACAGATGCTTGGGAGAAGCAAGCTAGTAAATTCTT GCAAATTCCTTCTGGACGAGTTGCACCTTCTCTTGCAGATACGCGTGTTCAATTTCACCTTGACCAGATACATTTGCTTGCCGTTCATGAAACACAGATA GCTATATTTGAAGCACCTAAATTGGAATGCCAAAAGCAGTGGTTCCGTCAAGAAGCAAGCGGTCCAATCACGCATGCTACATATTCCTGTGATAGCCAGT CCATATTTGTTAGCTTTGAAGATGGAAGTGTGGTTGTTCTCACTGCTTCAACACTCAGATTGAGATGCAGAATAAGTTCTACTGCTTATTTACCTCCTAA TCCAAGCTTAAGAGTATATCCTCTTGTCATTGCTGCACATCCCTCCGAGCCTGATCAATTCGCATTAGGACTAACAGATGGTGGAGTTCATGTGCTTGAA CCATTGGAGTCGGAAGGAAAATGGGGGACCTCGCCTCCAGTTGAAAATGGTGCTGGCCCTAGTGCAACTGCTGGCGCTGCTGGTTCTGAACAAGCTCAAA GGTAG
AA sequence Show only first row Show all	>Potri.006G066800.3 pacid=42767673 polypeptide=Potri.006G066800.3.p locus=Potri.006G066800 ID=Potri.006G066800.3.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKD LKVFAAFNEELFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLNWQHQLCKTPRSNPDIKTLFV DHSCGQPNGARAPSPVTNSLMDAVPKAGGFPPITGHGPFQPTPTIPPSLAGWMANPSTVPHPSASAGPMGLAAPNNAVALLKRPRSPPTNNPAIDYQTAD SEHVLKRSRPFGLSDEVNNLPVNILPIAYPSQNHGQSSYSSDDLPKNPVMTLAQGSAVKSMDFHPLQQILLLVGTSMGDVMVWELGSRERIGWKNFKVWD HNSRALQASLSSDYTASVNRVAWSPDGTLFGVAYSKHIVHVYSYHGGDDIRNHLQIDAHNGSVNDLAFSYPNKQLAIVTCGDDRTIRVWDAVAGTRLFNF LGHEAPVYSVCPHHKENIQFIFSTAADGKIKAWLYDNMGSRVDYDAPGNSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRSVGA VKFDTTKNRFLAAIDEFMIKFWDMDNVNLLTSIDAEGGLPASPCIRFNKEGTLLAVSTNDNSIKILANSDGIRLLRTVENRTFDASRAASASVVKPPPIG NFSPANAPVGTSGDDQAALAAPMVGMFLQNSDSRSLVDVKPKIQDESVEKSRIWKLTEINEPSQCRSLRLPDSLTSMRVSRLIYTNSGVAILALASNAVH KLWKWQRNDRNPSGKANASVPPQLWQPSSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNII AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWEKQASKFLQIPSGRVAPSLADTRVQFHLDQIHLLAVHETQI AIFEAPKLECQKQWFRQEASGPITHATYSCDSQSIFVSFEDGSVVVLTASTLRLRCRISSTAYLPPNPSLRVYPLVIAAHPSEPDQFALGLTDGGVHVLE PLESEGKWGTSPPVENGAGPSATAGAAGSEQAQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.006G066800 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.008G045300 [exp]	6.40	0.7411
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	11.40	0.6998
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.006G134000 [exp]	13.19	0.7260
AT5G05140			Transcription elongation facto...		Potri.016G033300 [exp]	13.41	0.6966
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	23.62	0.6715
AT2G21300			ATP binding microtubule motor ...		Potri.009G124500 [exp]	41.35	0.6583
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.001G193000 [exp]	48.74	0.6565	PLD1.2
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	49.35	0.6625	CEO1.2
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.011G070900 [exp]	54.60	0.6681	Pt-TPS7.1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	57.23	0.6817

Compare expression of checked genes

Potri.006G066800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.