Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15810 230 / 9e-77 Protein of unknown function (DUF567) (.1) AT1G80120 203 / 2e-66 Protein of unknown function (DUF567) (.1) AT2G38640 120 / 5e-34 Protein of unknown function (DUF567) (.1) AT5G41590 91 / 3e-22 Protein of unknown function (DUF567) (.1) AT5G01750 81 / 1e-18 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 77 / 1e-17 Protein of unknown function (DUF567) (.1) AT5G20640 77 / 4e-17 Protein of unknown function (DUF567) (.1) AT2G05910 65 / 5e-13 Protein of unknown function (DUF567) (.1) AT1G33840 66 / 7e-13 Protein of unknown function (DUF567) (.1) AT1G53870 63 / 4e-12 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192000 [exp] 240 / 5e-81 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 232 / 1e-77 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 119 / 2e-33 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 112 / 1e-30 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 99 / 2e-25 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 94 / 1e-23 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G140900 [exp] 87 / 7e-21 AT2G05910 245 / 8e-83 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 86 / 3e-20 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 85 / 6e-20 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038097 [exp] 256 / 7e-87 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 225 / 1e-74 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 184 / 8e-59 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 164 / 1e-51 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10006656 [exp] 142 / 6e-43 AT3G15810 127 / 7e-37 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 97 / 1e-24 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 91 / 2e-22 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 87 / 2e-20 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 86 / 4e-20 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10014154 [exp] 76 / 1e-16 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.006G067000.1 pacid=42768395 polypeptide=Potri.006G067000.1.p locus=Potri.006G067000 ID=Potri.006G067000.1.v4.1 annot-version=v4.1 ATGATGGTGGATGAGAAATTCTGTTTCAAAGAGGCAACGAACCTTACAGTTCATAAGACCTCTGTGTTCTTCCCAGGAGATGGTTTCATCGTCTATGATC CTAACAGGGAAATCATCTTTCGGTTTGATTCTTATGGCCCTGATTCTGAGCCTAAAGATGAGCTTGTTCTCATGGATGCCGGTGGCAAGGGCCTCCTCAC CCTTCGTCGAAAGAAGCCAAGTCTTCATCAACGGTGGGAAGGCTTCTTAGGAGAGAGGGAGGAAGATCATCAAGAACCAGTTTTTAGTGTTTGCAGATCT AGTATCATCGGACGGTCCAACTTGATCGTACAGGTTTTTGGTGATCCAGGTGAGGAGTACCATATCAGGGGTTCTTATTCTCAGAGATGCTGTACAATTT TTAACACTTCCTCGGAGAATTCATCAAAAGATCCGGTGGCTGTGATCAAAAGAAAAGTGGACCCCTCAACTCATGTGATGCTTGGAAAGGATGTCTTTTG GCTTTGTGTAAGGCCAGGGTTTGATGGTGCTTTTGCAATGGGATTGGTTCTGGTTCTTGATCAAATGTACGGTGATAATGCTGATGGTGATGTGCAGGAC GCAGACCCTACTTCCAAGGATTTTTCCTTTTAA
AA sequence Show only first row Show all	>Potri.006G067000.1 pacid=42768395 polypeptide=Potri.006G067000.1.p locus=Potri.006G067000 ID=Potri.006G067000.1.v4.1 annot-version=v4.1 MMVDEKFCFKEATNLTVHKTSVFFPGDGFIVYDPNREIIFRFDSYGPDSEPKDELVLMDAGGKGLLTLRRKKPSLHQRWEGFLGEREEDHQEPVFSVCRS SIIGRSNLIVQVFGDPGEEYHIRGSYSQRCCTIFNTSSENSSKDPVAVIKRKVDPSTHVMLGKDVFWLCVRPGFDGAFAMGLVLVLDQMYGDNADGDVQD ADPTSKDFSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	4.24	0.9411
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.011G042900 [exp]	6.48	0.8835
AT4G26288			unknown protein		Potri.009G120300 [exp]	6.63	0.9135
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	7.61	0.9184
AT2G46690			SAUR-like auxin-responsive pro...		Potri.015G006800 [exp]	8.48	0.8882
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	9.79	0.8961
AT2G20562			unknown protein		Potri.007G136800 [exp]	10.24	0.9149
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.009G101500 [exp]	10.81	0.8997	FUCT3.2
AT5G13500			unknown protein		Potri.001G028100 [exp]	13.26	0.8964
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	13.96	0.9096	Pt-FLA14.3

Compare expression of checked genes

Potri.006G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.