Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24150 259 / 2e-83 unknown protein AT4G32295 207 / 2e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128700 [exp] 475 / 7e-169 AT3G24150 248 / 1e-80 unknown protein Potri.018G027100 [exp] 293 / 1e-95 AT4G32295 238 / 6e-77 unknown protein Potri.006G254700 [exp] 287 / 2e-93 AT4G32295 243 / 8e-79 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043262 [exp] 322 / 6e-108 AT3G24150 258 / 7e-84 unknown protein Lus10019404 [exp] 278 / 2e-91 AT3G24150 251 / 6e-82 unknown protein Lus10001504 [exp] 193 / 2e-58 AT4G32295 208 / 9e-67 unknown protein Lus10002918 [exp] 91 / 3e-21 AT4G32295 98 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G067100.1 pacid=42766943 polypeptide=Potri.006G067100.1.p locus=Potri.006G067100 ID=Potri.006G067100.1.v4.1 annot-version=v4.1 ATGCCAAGGCCAGGGCCAAGGCCTTATGAGTGTGTGAGAAGAGCTTGGCATAGTGATAGGCACAAACCCATCCGAGGTTCCATGATTGGACAAATTTTAA GGATGGCCTATGACACTCACAGTGCTGCAACTAAAGGGAACAGGGAGTGGCAAGATAAGCTTCTTCTTGTGGTTTACAAAGCAGAGGAAATCATGTACTC TAAAGCCAACTCTGAGGCTGAGTATATGAACCAAGACACTTTTTGGGACAGAGTAAATGATGCCATCAACACCATTATTAGGAGAGATGAGAGCACTGAA ACTGGAGATCTTTTGCCTCCCTGTATTGAAGCTGCCCTTAATTTGGGATGCAAAGTGGAGAGAGCTTCGAGAAGTCAACGACACAGCAATCCCAGGAGCT ACCTCAGCCCGAGAACACAAGAATCGGCGTCTGTACCTCCTAGAGCTATAGATAGAACTCATGATGAACAAGGCCTTCAGTTAATGCCAGTTCACTCTAT CAATCAATTGAATATTGCAAGAGACACGGCAACTGGGAATCCAGATCTTTCGGTTTCAGAGTCTAATCATCATTTGGCTGAGAATAGTAATGTTGCTTAC AGTTACCCTTTCTTGTATGAGAATATCCCACCTGGCAGTAATCAGCTGACAACAAGGGAAGCCGACATGCACCAGAACTTTGGTTCAGTTTATCCCTTGT ATTGTGGAAATCAATATCAAATCGAAGCGTCTGATGTGGTCTCCCAATTTCCGATGAAGACGAAATCCAACACTATATTTGTGGGCAAACCTATTGGTAC ATCTGTTGCACCACATAGGGAAATGGGTGTCTTGCAGACAGTTTTCTCATGTTCCAGTGCTGAAGTTGGTTCCACGAGAATCACACAAGCAGATTTCAGA AATACCCATGACAAGCCAACTGGCACACAATGTGATTTATCCTTGAGGCTGGGTCTATACTCAGACCCGGGCATGAGCATAGAAAGAAATCAAGCTCAAG AAAATGAAAATGCTGGCTCAAGCAGATTTCAAGAAAGAGACAAGTTTAGTGTTTTTTCTCAACAAAGAAACAAGGAATTCTGTTTTTTTCCTGGTACAAG TACTAGGGATCCCTCTGGGTCCTGTTCGGTTAAGTGGGTTTCAGAGGGTGATGATCAGAATTTGGAGACAACCATCAGAAAGCGCAAAGCGCCCTTCAGA GACAATGCAGAGGATGGACATTTTTGCTGGCAGTCCAACATGTTCATTGGTCGAATAGAAGGGCCAGGTTTGTAG
AA sequence Show only first row Show all	>Potri.006G067100.1 pacid=42766943 polypeptide=Potri.006G067100.1.p locus=Potri.006G067100 ID=Potri.006G067100.1.v4.1 annot-version=v4.1 MPRPGPRPYECVRRAWHSDRHKPIRGSMIGQILRMAYDTHSAATKGNREWQDKLLLVVYKAEEIMYSKANSEAEYMNQDTFWDRVNDAINTIIRRDESTE TGDLLPPCIEAALNLGCKVERASRSQRHSNPRSYLSPRTQESASVPPRAIDRTHDEQGLQLMPVHSINQLNIARDTATGNPDLSVSESNHHLAENSNVAY SYPFLYENIPPGSNQLTTREADMHQNFGSVYPLYCGNQYQIEASDVVSQFPMKTKSNTIFVGKPIGTSVAPHREMGVLQTVFSCSSAEVGSTRITQADFR NTHDKPTGTQCDLSLRLGLYSDPGMSIERNQAQENENAGSSRFQERDKFSVFSQQRNKEFCFFPGTSTRDPSGSCSVKWVSEGDDQNLETTIRKRKAPFR DNAEDGHFCWQSNMFIGRIEGPGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24150			unknown protein		Potri.006G067100 [exp]	0	1
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	1.41	0.8642
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	4.69	0.8317
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	6.48	0.8146
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G072841 [exp]	7.48	0.8137
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	8.60	0.7500
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.001G027900 [exp]	9.38	0.7684
AT5G53020			Ribonuclease P protein subunit...		Potri.012G016600 [exp]	12.40	0.7268
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	13.03	0.7741	Pt-CYCD1.3
AT1G13570			F-box/RNI-like superfamily pro...		Potri.014G039700 [exp]	16.00	0.7548
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	17.14	0.8076	Pt-RGA-II24.67

Compare expression of checked genes

Potri.006G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.