Plant FIBer expression Database

Potri.006G067600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02530 210 / 2e-68 chloroplast thylakoid lumen protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G129600
[exp]
308 / 4e-107 AT4G02530 166 / 2e-51 chloroplast thylakoid lumen protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030109
[exp]
227 / 9e-75 AT4G02530 213 / 7e-70 chloroplast thylakoid lumen protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G067600.1 pacid=42767341 polypeptide=Potri.006G067600.1.p locus=Potri.006G067600 ID=Potri.006G067600.1.v4.1 annot-version=v4.1
ATGGCAACAGCATTTCTCTTAACTGCAAAACCCTTCCTCTCCTCCTCTTCAACACCATCTTCTCTATCTTCCCTAACAAATACACCAGTCCTGCTATCTT
GTGCGCAGCAAAAGAAATGTAATGCCACGAGACCACTGACTTTATGCAAAACTCTCAGTGATGAGTCACCGCCTGTAACACACTCTCCGGTTATAATAAC
CAAAAGAAGCTTGTCTATTTGCTTCTTAACCAGCTTTGTATTCTCATTGGCAAGTAGAGGTGATTCTAGTGCCAATGCAGCTATATTAGAAGCTGATGAC
GACGAAGAGCTAATGGAGAAAGTTAAGAGGGACAGAAAGAAGAGGTTAGAAAAACAAGGAGTAATTAGTTCTGCTAACCAGGAAAAAGGTTATTTGCAAG
ATCTTGTGTACAAGCTGAGCAAAGTAGGTCAAGCGATAGACAAGAATGATCTATCTACAGCTAGTTCTGTTCTTGGGGGTAGCACTGATACAGATTGGGT
CCGAAAGGCTAATATTGCCTTCACCAAGCTGAGCTCTAGTCCTGACGAAAAGACTCAGGTGGACAGCTTCAATTCTTCTCTAGCTTCATTAATTTCATCA
GTTACTGGCAATGACATTGAATCCTCCAAAACTGCTTTTGTATCATCAGCCACTGCTTTTGAGAAATGGACAGCCTTGACAGGGCTGGTTGGACAGCTCA
AAGGGCTTTGA
AA sequence
>Potri.006G067600.1 pacid=42767341 polypeptide=Potri.006G067600.1.p locus=Potri.006G067600 ID=Potri.006G067600.1.v4.1 annot-version=v4.1
MATAFLLTAKPFLSSSSTPSSLSSLTNTPVLLSCAQQKKCNATRPLTLCKTLSDESPPVTHSPVIITKRSLSICFLTSFVFSLASRGDSSANAAILEADD
DEELMEKVKRDRKKRLEKQGVISSANQEKGYLQDLVYKLSKVGQAIDKNDLSTASSVLGGSTDTDWVRKANIAFTKLSSSPDEKTQVDSFNSSLASLISS
VTGNDIESSKTAFVSSATAFEKWTALTGLVGQLKGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02530 chloroplast thylakoid lumen pr... Potri.006G067600
[exp]
0 1
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Potri.009G163200
[exp]
1.00 0.9879
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
2.00 0.9836
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.016G072100
[exp]
4.58 0.9816 Pt-BAS1.2,PtrcPrx2-cysA
AT3G14930 HEME1 Uroporphyrinogen decarboxylase... Potri.001G390800
[exp]
5.47 0.9740
AT2G40490 HEME2 Uroporphyrinogen decarboxylase... Potri.019G048900
[exp]
5.65 0.9603
AT4G01310 Ribosomal L5P family protein (... Potri.002G154600
[exp]
6.63 0.9770
AT2G01755 unknown protein Potri.008G135400
[exp]
8.48 0.9659
AT5G40950 RPL27 ribosomal protein large subuni... Potri.001G329500
[exp]
10.00 0.9762 Pt-RPL27.5
AT5G46110 TPT, APE2 triose-phosphate ⁄ phosp... Potri.011G057800
[exp]
11.22 0.9555 APE2.1
AT3G23760 unknown protein Potri.015G108200
[exp]
11.83 0.9701

Potri.006G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.