Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15340 135 / 1e-36 MBD10 methyl-CPG-binding domain 10 (.1.2) AT3G15790 131 / 2e-36 MBD11, ATMBD11 methyl-CPG-binding domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129700 [exp] 189 / 2e-58 AT1G15340 134 / 7e-37 methyl-CPG-binding domain 10 (.1.2) Potri.001G192300 [exp] 56 / 1e-09 AT1G15340 61 / 9e-12 methyl-CPG-binding domain 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043263 [exp] 119 / 2e-31 AT3G15790 141 / 1e-40 methyl-CPG-binding domain 11 (.1) Lus10030108 [exp] 120 / 4e-31 AT3G15790 145 / 5e-41 methyl-CPG-binding domain 11 (.1) Lus10019406 [exp] 115 / 6e-30 AT1G15340 137 / 3e-39 methyl-CPG-binding domain 10 (.1.2) Lus10002168 [exp] 114 / 2e-29 AT3G15790 136 / 3e-38 methyl-CPG-binding domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G067700.8 pacid=42769634 polypeptide=Potri.006G067700.8.p locus=Potri.006G067700 ID=Potri.006G067700.8.v4.1 annot-version=v4.1 ATGACAAGCCCCATGGAGAAAGACAAGGAGACTGTAGCAATAGAGGAAGAGGGTTTCTCTTTAGAGCTTCCTGCTCCTTCTGGCTGGAAAAAGAAGTTTG TACCCAAGAAAAGTGGGACCCCTAAGAAAGGTGAGATCGTTTTCTCTGCTCCAACTGGGGAAGAAATCACGAGCAAAAGACAGTTGGAACAGTACCTCAA AGCACACCCTGGTGGTCCAGCAGTATCTGAGTTTGACTGGGGCTCTGGTGAGACTCCAAGGAGATCAGCGAGGATTAGCGAGAAGGCAAAGGTAACTCCA GTGAAAGAAAGTGAACCTCCAAAAAAGAGAAGCAAGAAATCATCAGCTTCAAAGGAGAGTGAAGACACTGAAACTACTTTGGAAGGAACCGAGGAGGCAA AAGAGGTAGCTGAAAAAACTGAGAAAGGCGACATGGAGGTAGAAGTAGAAAAGGATGTCGAGAAAGAAAATCAAGGTGAGAATAAAGGACTAGGTACAGA GACTCAAACAGAGGCAGCTTGTACTGAAGAAGCTGGAGCTGGAAAAGAAGTCAAGACTTCTGCTGAAACTGAAGGGGGGAAAGCTGAATCAGAGCCCAGA AACTCTAAAGGGAAATCAAATGGTTCTGGAGCATCTGGAAATGAAAAAGAAAAAATAGATGAGGAAAAGGTGCAAGAGAAGGATGAGCAACCACAGGGTG AGGCAGCTAAAGAGCAGGGGTCAGGCCAACAGGAGAAAGCAAGTGCAGCCATTGATGATGAGAAAAAGGATGAAGCTGAAGATGACAAAGAGAAACTCAA CAGAACTGCTCCCGAGTCTGACGGAGAGATGAAGGGTAAAGAAGCAGAGAATTGCAGTGGTGAGAAACCTGACCATACAGGCGTTGATGGGGTCAAAGGA AAGGTGGATGGACAGGCGATTGAGAATGGCAGCAATGCTGACGAGGTTAAACCTTGA
AA sequence Show only first row Show all	>Potri.006G067700.8 pacid=42769634 polypeptide=Potri.006G067700.8.p locus=Potri.006G067700 ID=Potri.006G067700.8.v4.1 annot-version=v4.1 MTSPMEKDKETVAIEEEGFSLELPAPSGWKKKFVPKKSGTPKKGEIVFSAPTGEEITSKRQLEQYLKAHPGGPAVSEFDWGSGETPRRSARISEKAKVTP VKESEPPKKRSKKSSASKESEDTETTLEGTEEAKEVAEKTEKGDMEVEVEKDVEKENQGENKGLGTETQTEAACTEEAGAGKEVKTSAETEGGKAESEPR NSKGKSNGSGASGNEKEKIDEEKVQEKDEQPQGEAAKEQGSGQQEKASAAIDDEKKDEAEDDKEKLNRTAPESDGEMKGKEAENCSGEKPDHTGVDGVKG KVDGQAIENGSNADEVKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	0	1
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	2.00	0.8956
AT3G57990			unknown protein		Potri.016G046900 [exp]	2.00	0.9159
AT5G46030			unknown protein		Potri.001G373400 [exp]	2.64	0.8917
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	3.16	0.8876
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	3.46	0.9002
AT3G57990			unknown protein		Potri.006G191800 [exp]	3.46	0.8917
AT2G14910			unknown protein		Potri.001G298200 [exp]	9.48	0.8811
AT3G22530			unknown protein		Potri.010G086400 [exp]	10.00	0.8729
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Potri.009G125300 [exp]	10.58	0.8433
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	11.74	0.8998

Compare expression of checked genes

Potri.006G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.