Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 144 / 5e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 135 / 4e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 126 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 91 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 88 / 7e-20 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 85 / 4e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 67 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130100 [exp] 313 / 1e-106 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 307 / 1e-104 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 149 / 1e-43 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 123 / 4e-33 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 120 / 3e-31 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 102 / 3e-24 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 99 / 9e-23 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 97 / 9e-23 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 93 / 8e-21 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002166 [exp] 184 / 4e-56 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 183 / 7e-56 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 168 / 8e-51 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 167 / 2e-50 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 135 / 1e-37 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 113 / 3e-28 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 110 / 9e-28 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 104 / 7e-25 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 104 / 8e-25 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 103 / 9e-25 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G068200.1 pacid=42770487 polypeptide=Potri.006G068200.1.p locus=Potri.006G068200 ID=Potri.006G068200.1.v4.1 annot-version=v4.1 ATGCTTCTCAGAAGCTCATCAACGCCTATACTGAACACGTGGATCCCTCCACATTCGAAAGAACCGTCACCAGAACCTGAATCTTTACACCAAATCCAAA AATCCCGATCCATTTCGTTAACAGCGTCATCTTCAAGTTCATTTTCTTCCATTTCCTCACAGGACAATGATTCTATTAAAAGAATGACAAGAGCCTTTTC CGAGACTGATTTAAGAGACCTTTCAGTGCCAAAGAGAAAACCCAGTAACAGAATCTTGAATGGAATCTCTGTCGACGAGGAAGTTGAAGAAGAAGTGGAG AAAAAGGTGTCATTTTTGGAGAGTGGTTGGTTCTTTGAAGGATGTGAGGTTGGAGTGAAGGGTCAGAGTGATAGTGGGATGTTAGGGGTTATGGTGACGG GTGGTGGTAGTGAAGGTGGTGGAGGGAAGTTTTATGGTGGTGGTGGGTCGGATTTTGGTGATGATGGAGGATCAGGGTTTGGGGAGTCTAATAAGGGGAT TGAGAGTACTGATGTTTATTATCAGAAGATGATTGAAGCTGATCCTGGGAACCCTCTTCTTCTTAGTAATTACGCCAAATTCCTGAAAGAGGTTCGTGCG GATTTTGTAAAAGCTGAAGAGTACTGTGGGAGAGCGATTTTAGCAAGCCCCAATGATGCAGATGTTCTTTCAATGTATGCTGATTTAATATGGCATAGTC AGAAGCATGCTTCTCGGGCTGAATCTTATTTCGATCAAGCTGTTAAAGCTGCCCCTGATGATTGCTATGTGATGGCATCGTATGCACGGTTTCTTTGGGA CGCTGAAGAAGAAGAAGAGGAGGATGAACAGGGAGAAAATATAAGCGAGTTGTTGCCACCAACTTTTTCCCATGGATCTACGCCTCCTCTCCCTCCTTTA GCTGCCGCGTCTTGA
AA sequence Show only first row Show all	>Potri.006G068200.1 pacid=42770487 polypeptide=Potri.006G068200.1.p locus=Potri.006G068200 ID=Potri.006G068200.1.v4.1 annot-version=v4.1 MLLRSSSTPILNTWIPPHSKEPSPEPESLHQIQKSRSISLTASSSSSFSSISSQDNDSIKRMTRAFSETDLRDLSVPKRKPSNRILNGISVDEEVEEEVE KKVSFLESGWFFEGCEVGVKGQSDSGMLGVMVTGGGSEGGGGKFYGGGGSDFGDDGGSGFGESNKGIESTDVYYQKMIEADPGNPLLLSNYAKFLKEVRA DFVKAEEYCGRAILASPNDADVLSMYADLIWHSQKHASRAESYFDQAVKAAPDDCYVMASYARFLWDAEEEEEEDEQGENISELLPPTFSHGSTPPLPPL AAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	0	1
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	1.00	0.9701
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	4.24	0.9656
AT2G44930			Plant protein of unknown funct...		Potri.012G011800 [exp]	6.48	0.9565
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	8.36	0.9535
AT1G02630			Nucleoside transporter family ...		Potri.006G068100 [exp]	9.21	0.9061
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.004G176750 [exp]	10.00	0.9538
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	10.39	0.9471
AT1G30860			RING/U-box superfamily protein...		Potri.001G074800 [exp]	10.58	0.9387
AT2G21385			unknown protein		Potri.004G160800 [exp]	12.40	0.9426
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	13.41	0.9423

Compare expression of checked genes

Potri.006G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.